adSplit

Annotation-Driven Clustering

Bioconductor version: 2.7

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("adSplit")

To cite this package in a publication, start R and enter:

 citation("adSplit")

Documentation

PDF R Script Annotation-Driven Clustering

PDF bcb_logo.pdf

PDF minerva_bcb.pdf

PDF Rplots.pdf

PDF Reference Manual

Details

biocViews Microarray, Bioinformatics, Clustering

Depends R (>= 2.1.0), methods (>= 2.1.0)

Imports AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGG.db(>= 1.8.1), methods, multtest(>= 1.6.0), stats (>= 2.1.0)

Suggests golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1)

System Requirements

License GPL (>= 2)

URL http://compdiag.molgen.mpg.de/software/index.shtml

Depends On Me

Imports Me

Suggests Me

Version 1.20.0

Since Bioconductor 1.8 (R-2.3)