aCGH

Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: 2.7

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("aCGH")

To cite this package in a publication, start R and enter:

 citation("aCGH")

Documentation

PDF R Script aCGH Overview
PDF Reference Manual

Details

biocViews CopyNumberVariants, DataImport, Genetics
Depends R (>= 1.8.0), cluster, survival, multtest
Imports Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
Suggests
System Requirements
License GPL
URL
Depends On Me ADaCGH2
Imports Me snapCGH
Suggests Me beadarraySNP
Version 1.28.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source aCGH_1.28.0.tar.gz
Windows Binary aCGH_1.28.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary aCGH_1.28.0.tgz
Package Downloads Report Download Stats

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