Bioconductor version: 2.7
This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.
Author: Adi Laurentiu Tarca <atarca at med.wayne.edu>, Purvesh Kathri <purvesh at cs.wayne.edu> and Sorin Draghici <sorin at wayne.edu>
Maintainer: Adi Laurentiu Tarca <atarca at med.wayne.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SPIA")
To cite this package in a publication, start R and enter:
citation("SPIA")
Common Bioconductor workflows include:
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