Rolexa

Statistical analysis of Solexa sequencing data

Bioconductor version: 2.7

Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Maintainer: Jacques Rougemont <jacques.rougemont at epfl.ch>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("Rolexa")

To cite this package in a publication, start R and enter:

 citation("Rolexa")

PDF R Script Rolexa

PDF Reference Manual

Depends R (>= 2.9.0), mclust, graphics, grDevices, methods, ShortRead

Imports Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats

Suggests

System Requirements

License GPL-2

URL

Depends On Me

Imports Me

Suggests Me

Version 1.6.0

Since Bioconductor 2.5 (R-2.10)

Windows Binary Rolexa_1.6.0.zip (32- & 64-bit)

MacOS 10.5 (Leopard) binary Rolexa_1.6.0.tgz

Common Bioconductor workflows include:

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