HTqPCR

Automated analysis of high-throughput qPCR data

Bioconductor version: 2.7

Analysis of Ct values from quantitative real-time PCR (qPCR) assays. Data can be analyzed in high throughput across multiple conditions or replicates, and in spatially-defined formats such ABI TaqMan Low Density Arrays and conventional 96- or 384-well plates. HTqPCR handles data loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).

Author: Heidi Dvinge, Paul Bertone

Maintainer: Heidi Dvinge <heidi at ebi.ac.uk>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("HTqPCR")

To cite this package in a publication, start R and enter:

 citation("HTqPCR")

Documentation

PDF R Script qPCR analysis in R
PDF Reference Manual

Details

Imports affy, Biobase, gplots, graphics, grDevices, limma, methods, RColorBrewer, stats, utils
Suggests statmod
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source HTqPCR_1.4.0.tar.gz
Windows Binary HTqPCR_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary HTqPCR_1.4.0.tgz

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