BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: 2.7

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("BCRANK")

To cite this package in a publication, start R and enter:

 citation("BCRANK")

PDF R Script BCRANK

PDF BCRANK_intro_fig1.pdf

PDF BCRANK_intro_fig2.pdf

PDF Reference Manual

Depends methods

Imports Biostrings

Suggests seqLogo

System Requirements

License GPL-2

URL

Depends On Me

Imports Me

Suggests Me

Version 1.12.0

Since Bioconductor 2.2 (R-2.7)

Windows Binary BCRANK_1.12.0.zip (32- & 64-bit)

MacOS 10.5 (Leopard) binary BCRANK_1.12.0.tgz

Common Bioconductor workflows include:

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