To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneGroupAnalysis")

In most cases, you don't need to download the package archive at all.

GeneGroupAnalysis

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see GeneGroupAnalysis.

Gene Functional Class Analysis

Bioconductor version: 2.12

R package providing functions to peform gene-set significance analysis over simple cross-sectional or time series data designs.

Author: Alejandro Quiroz-Zarate and John Quackenbush

Maintainer: Alejandro Quiroz-Zarate <aquiroz at hsph.harvard.edu>

Citation (from within R, enter citation("GeneGroupAnalysis")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneGroupAnalysis")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("GeneGroupAnalysis")
PDF R Script GeneGroupAnalysis: a package for performance assessment and comparison for survival analysis
PDF Reference Manual
Text NEWS

Details

biocViews CrossSectional, DifferentialExpression, GeneExpression, MultipleComparisons, Software, TimeCourse
Version 1.6.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 2.10), MCMCpack, GO.db, breastCancerVDX, rheumaticConditionWOLLBOLD, hgu133a.db, hgu133plus2.db
Imports AnnotationDbi, annotate, tcltk
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://compbio.dfci.harvard.edu/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GeneGroupAnalysis_1.6.0.tar.gz
Windows Binary GeneGroupAnalysis_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GeneGroupAnalysis_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GeneGroupAnalysis/tree/release-2.12
Package Short Url http://bioconductor.org/packages/GeneGroupAnalysis/
Package Downloads Report Download Stats

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