To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("waveTiling")

In most cases, you don't need to download the package archive at all.

waveTiling

This package is for version 2.11 of Bioconductor; for the stable, up-to-date release version, see waveTiling.

Wavelet-Based Models for Tiling Array Transcriptome Analysis

Bioconductor version: 2.11

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>

Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>

Citation (from within R, enter citation("waveTiling")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("waveTiling")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("waveTiling")
PDF R Script The waveTiling package
PDF Reference Manual
Text NEWS

Details

biocViews DifferentialExpression, GeneExpression, MicroArray, Software, TimeCourse
Version 1.0.0
In Bioconductor since BioC 2.11 (R-2.15) (3.5 years)
License GPL (>=2)
Depends oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges
LinkingTo
Suggests BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart12
SystemRequirements
Enhances
URL https://r-forge.r-project.org/projects/wavetiling/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source waveTiling_1.0.0.tar.gz
Windows Binary waveTiling_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/waveTiling/tree/release-2.11
Package Short Url http://bioconductor.org/packages/waveTiling/
Package Downloads Report Download Stats

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