To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowWorkspace")

In most cases, you don't need to download the package archive at all.

flowWorkspace

This package is for version 2.11 of Bioconductor; for the stable, up-to-date release version, see flowWorkspace.

Import flowJo Workspaces into BioConductor and replicate flowJo gating with flowCore

Bioconductor version: 2.11

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

Author: Greg Finak, Mike Jiang, Mose Andre

Maintainer: Greg Finak <gfinak at fhcrc.org>

Citation (from within R, enter citation("flowWorkspace")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowWorkspace")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("flowWorkspace")
PDF R Script Importing flowJo Workspaces into R
PDF Reference Manual
Text NEWS

Details

biocViews DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version 1.4.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License Artistic-2.0
Depends Cairo, BiocGenerics, methods, RBGL, graph, XML, flowCore, flowViz, Biobase, IDPmisc, tools, hexbin
Imports Biobase, XML, flowCore, graph, graphics, lattice, methods, stats, stats4, utils
LinkingTo
Suggests testthat, flowWorkspaceData, Rgraphviz
SystemRequirements
Enhances multicore, Rmpi, ncdfFlow
URL
Depends On Me flowStats, QUALIFIER
Imports Me QUALIFIER
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source flowWorkspace_1.4.0.tar.gz
Windows Binary flowWorkspace_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/flowWorkspace/tree/release-2.11
Package Short Url http://bioconductor.org/packages/flowWorkspace/
Package Downloads Report Download Stats

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