To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cosmoGUI")

In most cases, you don't need to download the package archive at all.

cosmoGUI

This package is for version 2.11 of Bioconductor; for the stable, up-to-date release version, see cosmoGUI.

GUI for constructing constraint sets used by the cosmo package

Bioconductor version: 2.11

cosmoGUI allows the user to interactively define constraint sets that can be used by the cosmo package to supervise the search for shared motifs in a set of DNA sequences. The constraints can be either adapted from a set of commonly used templates or defined from scratch.

Author: Fabian Gallusser, Oliver Bembom, and Sandrine Dudoit

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

Citation (from within R, enter citation("cosmoGUI")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cosmoGUI")

Documentation

PDF Reference Manual

Details

biocViews GUI, SequenceMatching, Software
Version 1.24.0
In Bioconductor since BioC 2.0 (R-2.5) (9 years)
License LGPL (>= 2)
Depends tkWidgets, cosmo
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://cosmoweb.berkeley.edu/intro.html http://www.bepress.com/ucbbiostat/paper209/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cosmoGUI_1.24.0.tar.gz
Windows Binary cosmoGUI_1.24.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cosmoGUI/tree/release-2.11
Package Short Url http://bioconductor.org/packages/cosmoGUI/
Package Downloads Report Download Stats

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