To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

In most cases, you don't need to download the package archive at all.

MinimumDistance

This package is for version 2.11 of Bioconductor; for the stable, up-to-date release version, see MinimumDistance.

A package for de novo CNV detection in case-parent trios

Bioconductor version: 2.11

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf, Moiz Bootwalla, and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("MinimumDistance")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("MinimumDistance")
PDF R Script Detection of de novo copy number alterations in case-parent trios
PDF Reference Manual
Text NEWS

Details

biocViews Bioinformatics, CopyNumberVariants, Microarray, SNP, Software
Version 1.2.4
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 2.14), BiocGenerics(>= 0.3.2), IRanges(>= 1.13.30)
Imports methods, DNAcopy, utils, msm, lattice, BiocGenerics, VanillaICE(>= 1.19.23), ff, SNPchip(>= 2.3.10), Biobase(>= 2.17.8), foreach, oligoClasses(>= 1.19.34), GenomicRanges
LinkingTo
Suggests human610quadv1bCrlmm, RUnit
SystemRequirements
Enhances snow, doSNOW
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MinimumDistance_1.2.4.tar.gz
Windows Binary MinimumDistance_1.2.4.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MinimumDistance/tree/release-2.11
Package Short Url http://bioconductor.org/packages/MinimumDistance/
Package Downloads Report Download Stats

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