To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GLAD")

In most cases, you don't need to download the package archive at all.

GLAD

This package is for version 2.11 of Bioconductor; for the stable, up-to-date release version, see GLAD.

Gain and Loss Analysis of DNA

Bioconductor version: 2.11

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Author: Philippe Hupe

Maintainer: Philippe Hupe <glad at curie.fr>

Citation (from within R, enter citation("GLAD")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GLAD")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GLAD")

PDF R Script GLAD

PDF Reference Manual

Details

biocViews CopyNumberVariants, Microarray, Software

Version 2.20.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)

License GPL-2

Depends R (>= 2.10)

Imports

LinkingTo

Suggests aws, tcltk

SystemRequirements gsl. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Enhances

URL http://bioinfo.curie.fr

Depends On Me ITALICS, MANOR

Imports Me ITALICS, MANOR, snapCGH

Suggests Me ADaCGH2

Build Report