To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleR")

In most cases, you don't need to download the package archive at all.

nucleR

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see nucleR.

Nucleosome positioning package for R

Bioconductor version: 2.10

Nucleosome positioning for Tiling Arrays and Next Generation Sequencing Experiments

Author: Oscar Flores, David Rossell

Maintainer: Oscar Flores <oflores at mmb.pcb.ub.es>

Citation (from within R, enter citation("nucleR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("nucleR")
PDF Quick analysis of nucleosome positioning experiments
PDF Reference Manual
Text NEWS

Details

biocViews ChIPseq, Genetics, HighThroughputSequencing, Microarray, Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License LGPL (>= 3)
Depends methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.5), Biobase(>= 2.15.1), ShortRead, parallel
Imports methods, BiocGenerics, IRanges, Biobase, ShortRead, GenomicRanges, stats
LinkingTo
Suggests
SystemRequirements
Enhances htSeqTools
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source nucleR_1.4.0.tar.gz
Windows Binary nucleR_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/nucleR/tree/release-2.10
Package Short Url http://bioconductor.org/packages/nucleR/
Package Downloads Report Download Stats

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