To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("motifRG")

In most cases, you don't need to download the package archive at all.

motifRG

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see motifRG.

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: 2.10

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Citation (from within R, enter citation("motifRG")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("motifRG")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("motifRG")
PDF motifRG: regression-based discriminative motif discovery
PDF Reference Manual

Details

biocViews Software, Transcription
Version 1.0.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 2.10)
Imports Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source motifRG_1.0.0.tar.gz
Windows Binary motifRG_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/motifRG/tree/release-2.10
Package Short Url http://bioconductor.org/packages/motifRG/
Package Downloads Report Download Stats

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