To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("minfi")

In most cases, you don't need to download the package archive at all.

minfi

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see minfi.

Analyze Illumina's 450k methylation arrays

Bioconductor version: 2.10

Tools for analyzing and visualizing Illumina's 450k array data

Author: Kasper Daniel Hansen, Martin Aryee

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("minfi")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("minfi")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("minfi")
PDF Minfi Guide
PDF Reference Manual
Text NEWS

Details

biocViews DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.2.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.1.0), Biobase(>= 2.15.1), lattice, reshape, GenomicRanges
Imports beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, crlmm, matrixStats, mclust
LinkingTo
Suggests IlluminaHumanMethylation450kmanifest(>= 0.2.0), minfiData(>= 0.2.0), Biostrings
SystemRequirements
Enhances
URL
Depends On Me IlluminaHumanMethylation450kmanifest, minfiData
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source minfi_1.2.0.tar.gz
Windows Binary minfi_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/minfi/tree/release-2.10
Package Short Url http://bioconductor.org/packages/minfi/
Package Downloads Report Download Stats

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