To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affyQCReport")

In most cases, you don't need to download the package archive at all.

affyQCReport

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see affyQCReport.

QC Report Generation for affyBatch objects

Bioconductor version: 2.10

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Citation (from within R, enter citation("affyQCReport")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affyQCReport")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("affyQCReport")
PDF affyQCReport: Methods for Generating Affymetrix QC Reports
PDF Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Software
Version 1.34.0
In Bioconductor since BioC 1.7 (R-2.2) (10.5 years)
License LGPL (>= 2)
Depends Biobase(>= 1.13.16), affy, lattice
Imports affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
LinkingTo
Suggests tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me BiocCaseStudies
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affyQCReport_1.34.0.tar.gz
Windows Binary affyQCReport_1.34.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affyQCReport/tree/release-2.10
Package Short Url http://bioconductor.org/packages/affyQCReport/
Package Downloads Report Download Stats

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