To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XDE")

In most cases, you don't need to download the package archive at all.

XDE

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 2.10

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XDE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("XDE")
PDF XDE Vignette
PDF XdeParameterClass Vignette
PDF Reference Manual
Text NEWS

Details

biocViews Bioinformatics, DifferentialExpression, Microarray, Software
Version 2.2.0
In Bioconductor since BioC 2.2 (R-2.7) (8 years)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5), methods, graphics
Imports Biobase, BiocGenerics, genefilter, graphics, grDevices, gtools, MergeMaid, methods, stats, utils, mvtnorm
LinkingTo
Suggests siggenes, genefilter, MASS, RColorBrewer, GeneMeta
SystemRequirements
Enhances coda
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source XDE_2.2.0.tar.gz
Windows Binary XDE_2.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/XDE/tree/release-2.10
Package Short Url http://bioconductor.org/packages/XDE/
Package Downloads Report Download Stats

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