To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPchip")

In most cases, you don't need to download the package archive at all.

SNPchip

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see SNPchip.

Visualizations for copy number alterations

Bioconductor version: 2.10

This package defines methods for visualizing high-throughput genomic data

Author: Robert Scharpf <rscharpf at jhsph.edu> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("SNPchip")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPchip")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("SNPchip")
PDF Plotting Idiograms
PDF Reference Manual

Details

biocViews CopyNumberVariants, GeneticVariability, SNP, Software, Visualization
Version 2.2.0
In Bioconductor since BioC 2.0 (R-2.5) (9 years)
License LGPL (>= 2)
Depends R (>= 2.14.0)
Imports graphics, lattice, grid, foreach, IRanges, utils, methods, oligoClasses(>= 1.17.25), Biobase
LinkingTo
Suggests crlmm
SystemRequirements
Enhances doSNOW, VanillaICE, RColorBrewer
URL http://www.biostat.jhsph.edu/~iruczins/software/snpchip.html
Depends On Me mBPCR
Imports Me crlmm, MinimumDistance, phenoTest
Suggests Me Category, VanillaICE
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SNPchip_2.2.0.tar.gz
Windows Binary SNPchip_2.2.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/SNPchip/tree/release-2.10
Package Short Url http://bioconductor.org/packages/SNPchip/
Package Downloads Report Download Stats

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