To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RefPlus")

In most cases, you don't need to download the package archive at all.

RefPlus

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see RefPlus.

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Bioconductor version: 2.10

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

Citation (from within R, enter citation("RefPlus")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RefPlus")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("RefPlus")
PDF An_Exploration_of_Extensions_to_the_RMA_Algorithm.pdf
PDF Extensions_to_RMA_Algorithm.pdf
PDF RefPlus Manual
PDF Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.26.0
In Bioconductor since BioC 2.0 (R-2.5) (9 years)
License GPL (>= 2)
Depends R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
LinkingTo
Suggests affydata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RefPlus_1.26.0.tar.gz
Windows Binary RefPlus_1.26.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RefPlus/tree/release-2.10
Package Short Url http://bioconductor.org/packages/RefPlus/
Package Downloads Report Download Stats

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