To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAither")

In most cases, you don't need to download the package archive at all.

RNAither

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see RNAither.

Statistical analysis of high-throughput RNAi screens

Bioconductor version: 2.10

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Nora Rieber <RNAither at gmx.de>

Citation (from within R, enter citation("RNAither")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAither")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("RNAither")
PDF RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
PDF Reference Manual

Details

biocViews Annotation, Bioinformatics, CellBasedAssays, GO, Preprocessing, QualityControl, Software, Visualization
Version 2.4.0
In Bioconductor since BioC 2.3 (R-2.8) (7.5 years)
License Artistic-2.0
Depends R (>= 2.10), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
LinkingTo
Suggests
SystemRequirements
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URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RNAither_2.4.0.tar.gz
Windows Binary RNAither_2.4.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RNAither/tree/release-2.10
Package Short Url http://bioconductor.org/packages/RNAither/
Package Downloads Report Download Stats

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