To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PatientGeneSets")

In most cases, you don't need to download the package archive at all.

PatientGeneSets

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see PatientGeneSets.

Patient-oriented gene-set analysis

Bioconductor version: 2.10

Patient-oriented analysis of mutations from cancer genome studies.

Author: Simina M. Boca, Giovanni Parmigiani

Maintainer: Simina M. Boca <sboca at jhsph.edu>

Citation (from within R, enter citation("PatientGeneSets")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PatientGeneSets")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("PatientGeneSets")
PDF PatientGeneSetsTutorial
PDF Reference Manual

Details

biocViews Bioinformatics, Software
Version 1.6.0
In Bioconductor since BioC 2.7 (R-2.12) (5.5 years)
License GPL (>= 2.0)
Depends R (>= 2.10.0), qvalue
Imports AnnotationDbi, limma, methods, stats
LinkingTo
Suggests KEGG.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source PatientGeneSets_1.6.0.tar.gz
Windows Binary PatientGeneSets_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/PatientGeneSets/tree/release-2.10
Package Short Url http://bioconductor.org/packages/PatientGeneSets/
Package Downloads Report Download Stats

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