To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotIV")

In most cases, you don't need to download the package archive at all.

MotIV

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see MotIV.

Motif Identification and Validation

Bioconductor version: 2.10

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at chibi.ubc.ca>, Raphael Gottardo <raphael.gottardo at ircm.qc.ca>

Citation (from within R, enter citation("MotIV")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotIV")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("MotIV")
PDF The MotIV users guide
PDF Reference Manual

Details

biocViews ChIPSeq, ChIPchip, GenomicSequence, Microarray, Software
Version 1.10.0
In Bioconductor since BioC 2.6 (R-2.11) (6 years)
License GPL 2
Depends R (>= 2.10), BiocGenerics(>= 0.1.0)
Imports graphics, grid, methods, BiocGenerics, IRanges(>= 1.13.5), lattice, rGADEM, stats, utils
LinkingTo
Suggests rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MotIV_1.10.0.tar.gz
Windows Binary MotIV_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MotIV/tree/release-2.10
Package Short Url http://bioconductor.org/packages/MotIV/
Package Downloads Report Download Stats

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