To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Harshlight")
In most cases, you don't need to download the package archive at all.
This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see Harshlight.
Bioconductor version: 2.10
The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitute value as whole matrix to solve the memory problem.
Author: Mayte Suarez-Farinas, Maurizio Pellegrino, Knut M. Wittkowski, Marcelo O. Magnasco
Maintainer: Maurizio Pellegrino <mpellegri at rockefeller.edu>
Citation (from within R,
enter citation("Harshlight")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Harshlight")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Harshlight")
Follow Installation instructions to use this package in your R session.
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: