To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

In most cases, you don't need to download the package archive at all.

ChIPseqR

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see ChIPseqR.

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: 2.10

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at well.ox.ac.uk>

Citation (from within R, enter citation("ChIPseqR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("ChIPseqR")
PDF Introduction to ChIPseqR
PDF Reference Manual

Details

biocViews Bioinformatics, ChIPseq, Infrastructure, Software
Version 1.10.0
In Bioconductor since BioC 2.5 (R-2.10) (6.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0), methods, BiocGenerics, ShortRead
Imports Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ChIPseqR_1.10.0.tar.gz
Windows Binary ChIPseqR_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ChIPseqR/tree/release-2.10
Package Short Url http://bioconductor.org/packages/ChIPseqR/
Package Downloads Report Download Stats

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