Taxonomy browser Taxonomy Browser (Mus musculus)

Link to NCBI Front Page Taxonomy Logo

Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections

Entrez records

Database name Direct links Subtree links Links from type

BioProject 97,718 98,150 -

BioSample 2,842,929 2,857,419 -

Conserved Domains 22 22 -

GEO DataSets 2,526,327 2,527,360 -

Gene 251,758 251,853 -

Identical Protein Groups 263,502 266,415 -

Nucleotide 10,582,364 11,193,432 -

PubChem BioAssay 233,486 233,490 -

PMC 42,239 42,646 -

Protein 381,404 391,217 -

SRA 2,859,623 2,874,504 -

Structure 9,975 9,981 -

Taxonomy 18 18 -

Mus musculus

Taxonomy ID: 10090 (for references in articles please use NCBI:txid10090)

current name

Mus musculus Linnaeus, 1758

includes:

LK3 transgenic mice

Mus sp. 129SV

nude mice

transgenic mice

Balb/c mouse

Genbank common name: house mouse
NCBI BLAST name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:

common name(s) mouse

Lineage(full): cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus

Comments and References:

image:Mus musculus

Image by Ilmari Karonen from Wikimedia Commons under a Public Domain license.
* Image may not have been verified for accuracy by NCBI Taxonomy.

Note: Some journals identify organisms only with vernacular names like "mouse" or "rats". Currently, an organism idenitified as "mouse" will be found under the name "Mus sp." although we are aware that most of the corresponding sequence records are likely to be from "Mus musculus". If it is important to see all records for "Mus musculus", you should therefore consider retrieving the records for "Mus sp." as well.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider

Mus musculus taxonomy/phylogenetic Animal Diversity Web

Mus musculus LinnA%A6us, 1758 taxonomy/phylogenetic AnimalBase

Mus musculus taxonomy taxonomy/phylogenetic Arctos Specimen Database

DNA barcoding : Mus musculus taxonomy/phylogenetic Barcodes of Life

DigiMorph images Digital Morphology

dryaddb supplemental materials Dryad Digital Repository

Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Encyclopedia of life

GOLD: 31 Organisms organism-specific Genomes On Line Database

Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions

Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource

639370800: Mus musculus C57BL/6J organism-specific Integrated Microbial Genomes

Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Integrated Taxonomic Information System

Mus musculus taxonomy/phylogenetic Lifemap

Mus musculus Linnaeus 1758 taxonomy/phylogenetic Mammal Species of the World

MamTex taxonomy/phylogenetic Mammals of Texas

Coat Colors of Mice (WK Silvers) taxonomy/phylogenetic NCBI taxonomy bookmarks

Mouse Genome Informatics (Jackson Lab) taxonomy/phylogenetic NCBI taxonomy bookmarks

male mouse (BAC proposal) taxonomy/phylogenetic NHGRI genome proposal white papers

house mouse strains (BAC proposal) taxonomy/phylogenetic NHGRI genome proposal white papers

OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix

Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Ocean Biogeographic Information System

UCSCgb sequence screening/similarity/alignment UCSC Genome Browser

WebScipio: Mus musculus organism-specific WebScipio - eukaryotic gene identification

WebScipio: Mus musculus str. mixed organism-specific WebScipio - eukaryotic gene identification

Mus musculus Linnaeus, 1758 taxonomy/phylogenetic World Register of Marine Species

diArk: Mus musculus C57BL/6NJ organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus DBA/2J organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus NZO/HiLtJ organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus 129S1/SvImJ organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus A/J organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus NOD/ShiLtJ organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus AKR/J organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus str. mixed organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus C3H/HeJ organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus 129Sv/Jae organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus BALB/cJ organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus MSM/Ms organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus CBA/J organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus LP/J organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus FVB/NJ organism-specific diArk - a resource for eukaryotic genome research

diArk: Mus musculus C57BL/6J organism-specific diArk - a resource for eukaryotic genome research

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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