GenomeNet Database Resources

DBGET: Integrated Database Retrieval System
DBGET search
LinkDB search SPARQL endpoint available

KEGG: Kyoto Encyclopedia of Genes and Genomes
KEGG2 - Table of contents
KEGG PATHWAY - Systems information: pathways
KEGG BRITE - Systems information: ontologies
KEGG Organisms - Organism-specific entry points
KEGG GENES - Genomic information
KEGG LIGAND - Chemical information
KEGG MEDICUS - Health information

KEGG MGENES: Metagenome gene catalogs

KEGG OC - KEGG ortholog clusters
REST service is available
SPARQL endpoint available

Virus-Host DB: Hosts of sequenced viruses

Taxonomy: Organism classification

Reaction Ontology: Reaction classifications

varDB: Antigenic variation database

GenomeNet Bioinformatics Tools

Sequence Analysis
BLAST / FASTA - Sequence similarity search
MOTIF - Sequence motif search
MAFFT / CLUSTALW / PRRN - Multiple alignment
TREE - Phylogenetic analysis

Genome Analysis
DiGAlign - The Dynamic Genomic Alignment Server
ViPTree - The Viral Proteomic Tree Server
KofamKOALA - Gene annotation and KEGG mapping
KAAS - KEGG automatic annotation server
EGassembler - EST consensus contigs
GENIES - Gene network prediction
DINIES - Drug-target network prediction

Chemical Analysis
SIMCOMP / SUBCOMP - Chemical structure search
REST service is available
KCaM - Glycan structure search
PathComp - Possible reaction path computation
PathSearch - Similar reaction path search
PathPred - Reaction pathway prediction
E-zyme - Enzymatic reaction prediction

Database links