PSEUDOBASE DATA: PKB80-MMTV_gag/pro

PKB-number: PKB80

Definition: Gag/pro ribosomal frameshift site of mouse mammary tumor virus

Organism: mouse mammary tumor virus

Abbreviation: MMTV_gag/pro

RNA type: Viral Frameshift

Keywords: retrovirus; ribosomal frameshift; gag-pro

EMBL number: AF033807

Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)

Supported by: Mutagenesis; NMR; Sequence comparison

References: [1] ten Dam E. et al. (1990). Virus Genes 4:121-136.
[2] Chamorro M. et al. (1992). Proc.Natl.Acad.Sci.USA 89:713-717.
[3] Shen L.X. & Tinoco I. (1995). J. Mol. Biol. 247:963-978.
[4] Chen X. et al. (1996). J. Mol. Biol. 260:479-483.

Stem sizes:
Loop sizes: 5 7
1 1 8

Position Paired:

2090-2094; 2104-2108
2096-2102; 2117-2123

Bracket view of structure:

 2080 2090 2100 2110 2120
 # 6789|123456789|123456789|123456789|123456789|1234
 $ 2076 AAAAAACUUGUAAAGGGGCAGUCCCCUAGCCCCGCUCAAAAGGGGGAUG=2124
 % 2076 ::::::::::::::(((((:[[[[[[[:)))))::::::::]]]]]]]: