References Associated with Literature Topic: Epidemiological data

Reference	Species	Genes Addressed
*Abdolrasouli A, et al.* (2025)** Cluster of clonal fluconazole-resistant Candida parapsilosis harbouring Y132F mutation in ERG11 gene in a neonatal ICU in the UK. J Antimicrob Chemother CGD Papers Entry Pubmed Entry	C. parapsilosis	\|ERG11
*Abu-Helu R, et al.* (2025)** Whole-genome sequencing of the first Candida auris clinical isolate from a patient with sepsis in Palestine. Microbiol Resour Announc :e0123924 CGD Papers Entry Pubmed Entry	C. auris	\|ERG11 \|MRR1
*Anaele EN, et al.* (2025)** Trends in Prevalence of Yeast Species Associated With Urogenital Infection in Nsukka, Nigeria: An Overview of True Candida Species and Genotyping of Candida albicans hwp1-Heterozygous Isolates. Int J Microbiol 2025:3115363 CGD Papers Entry Pubmed Entry	C. albicans	\|HWP1 \|ITS1 \|ITS2
*Castanheira M, et al.* (2025)** Activity of Rezafungin Against Echinocandin Non-wild type Candida glabrata Clinical Isolates From a Global Surveillance Program. Open Forum Infect Dis 12(3):ofae702 CGD Papers Entry Pubmed Entry	C. glabrata	\|FKS1 \|FKS2
*Chavez JF, et al.* (2025)** Virulence Factors and Molecular Identification of Candida Species Causing Candidemia in Honduras. J Fungi (Basel) 11(7) CGD Papers Entry Pubmed Entry	C. albicans	\|ITS1 \|ITS2
*De Paiva Macedo J, et al.* (2025)** Unveiling antifungal resistance and biocide tolerance in clinical isolates of Candida spp. Future Microbiol :1-12 CGD Papers Entry Pubmed Entry	C. albicans	\|ERG11
*El Hady R, et al.* (2025)** Phenotypic and genotypic characterization of Candida parapsilosis complex isolates from a Lebanese hospital. Sci Rep 15(1):4853 CGD Papers Entry Pubmed Entry	C. parapsilosis	\|ALS6 \|ALS7 \|CDR1 \|ERG11 \|ERG6 \|SAP7 \|SAP9 \|SAPP3 \|UPC2
*Guan Q, et al.* (2025)** Independent introductions and nosocomial transmission of Candida auris in Saudi Arabia horizontal line a genomic epidemiological study of an outbreak from a hospital in Riyadh. Microbiol Spectr :e0326024 CGD Papers Entry Pubmed Entry	C. auris	\|CIT1 \|ERG11
*Ibanez-Cervantes JL, et al.* (2025)** Association of ALS genes in strains of the genus Candida with cervical cytological alterations. Indian J Med Microbiol 54:100795 CGD Papers Entry Pubmed Entry	C. albicans	\|ALS1 \|ALS2 \|ALS3 \|ALS4 \|ALS5 \|ALS6 \|ALS7 \|ALS9
*Kubica S, et al.* (2025)** Whole genome sequencing analysis of Candida glabrata isolates collected from patients with selected drug-resistant candidiasis hospitalized in Eastern Poland. Folia Microbiol (Praha) CGD Papers Entry Pubmed Entry	C. glabrata	\|CDR1 \|ERG5 \|ERG6 \|FCY1 \|FCY2 \|FKS1 \|FKS2 \|PDH1 \|PDR1
*Lin W, et al.* (2025)** Prevalence and molecular basis of resistance to echinocandins among clinical Candida glabrata isolates in Guangdong province, China. BMC Microbiol 25(1):521 CGD Papers Entry Pubmed Entry	C. glabrata	\|FKS1 \|FKS2
*Morales-Lopez S, et al.* (2025)** HWP1 Gene Sequence Diversity and Antifungal Susceptibility Patterns in Colombian Vulvovaginal Isolates of the Candida albicans Species Complex. Int J Microbiol 2025:8507361 CGD Papers Entry Pubmed Entry	C. parapsilosis	\|HWP1
C. dubliniensis	\|HWP1
C. albicans	\|HWP1
*Phan-Canh T, et al.* (2025)** White-Brown switching controls phenotypic plasticity and virulence of Candida auris. Cell Rep 44(7):115976 CGD Papers Entry Pubmed Entry Web Supplement Data	C. auris	\|B9J08_004111 \|B9J08_004173 \|CRZ2 \|EFG1 \|MSN4 \|RCA1 \|WOR1
*Rhimi W, et al.* (2025)** Multilocus sequence typing of Candida albicans isolates from wild and farm animals from southern Italy. One Health 21:101196 CGD Papers Entry Pubmed Entry	C. albicans	\|ACC1 \|ADP1 \|ALA1 \|VPS13
*Sharma V, et al.* (2025)** Genotypic Diversity and Molecular Basis of Fluconazole Resistance in Candida parapsilosis Clinical Isolates Collected Over 7 Years in a Tertiary-Care Hospital in North India. Mycoses 68(5):e70062 CGD Papers Entry Pubmed Entry	C. parapsilosis	\|CDR1 \|ERG11 \|MDR1
*Smithgall MC, et al.* (2025)** Genetic and Phenotypic Intra-Clade Variation in Candida auris Isolated from Critically Ill Patients in a New York City Tertiary Care Center. Clin Chem 71(1):185-191 CGD Papers Entry Pubmed Entry	C. auris	\|CDR1 \|ERG11 \|FKS1 \|TAC1b
*Wang Y, et al.* (2025)** Epidemiological Trends and Antimicrobial Resistance of Candida auris: A Focus on 7 Cases in a Single Medical Institution of Southern China. Infect Drug Resist 18:2557-2568 CGD Papers Entry Pubmed Entry	C. auris	\|ERG11
*Yan L, et al.* (2025)** Isolation of Fluconazole-Resistant South Asian Clade Candida auris in Beijing, China. Am J Trop Med Hyg CGD Papers Entry Pubmed Entry	C. auris	\|CDR1 \|ERG11 \|SNQ2
*Abdillah A, et al.* (2024)** Malian Children's Core Gut Mycobiome. Microorganisms 12(5) CGD Papers Entry Pubmed Entry	C. albicans	\|ITS1 \|ITS2
*Al-Groom RM, et al.* (2024)** Genotypes analysis and antifungal susceptibility of Candida albicans strains isolated from women with vaginal candidiasis in Jordan using PCR targeting 25SrDNA and ALT repeat sequences of the RPS. Pak J Med Sci 40(8):1619-1624 CGD Papers Entry Pubmed Entry	C. albicans	\|C1_07750W_A
*Bergin S, et al.* (2024)** Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. Antimicrob Agents Chemother :e0161923 CGD Papers Entry Pubmed Entry Web Supplement Data	C. parapsilosis	\|CDR1 \|CDR1B \|ERG11 \|MDR1 \|MDR1B \|MRR1
*Brassington PJT, et al.* (2024)** Genomic reconstruction of an azole-resistant Candida parapsilosis outbreak and the creation of a multi-locus sequence typing scheme: a retrospective observational and genomic epidemiology study. Lancet Microbe :100949 CGD Papers Entry Pubmed Entry	C. parapsilosis	\|CPAR2_101400 \|CPAR2_101470 \|CPAR2_108720 \|CPAR2_808110 \|ERG11
*Castanheira M, et al.* (2024)** Recent increase in Candida auris frequency in the SENTRY surveillance program: antifungal activity and genotypic characterization. Antimicrob Agents Chemother :e0057024 CGD Papers Entry Pubmed Entry	C. auris	\|CDR1 \|ERG11 \|ERG3 \|FKS1 \|MRR1 \|UPC2
*Chen XF, et al.* (2024)** Genome-wide analysis of in vivo-evolved Candida auris reveals multidrug-resistance mechanisms. Mycopathologia 189(3):35 CGD Papers Entry Pubmed Entry	C. auris	\|ERG11 \|TAC1b
*Corbu VM, et al.* (2024)** Phenotypic and Genotypic Characterization of Resistance and Virulence Markers in Candida spp. Isolated from Community-Acquired Infections in Bucharest, and the Impact of AgNPs on the Highly Resistant Isolates. J Fungi (Basel) 10(8) CGD Papers Entry Pubmed Entry	C. albicans	\|ALS1 \|ALS3 \|HWP1
*De Carolis E, et al.* (2024)** Follow the Path: Unveiling an Azole Resistant Candida parapsilosis Outbreak by FTIR Spectroscopy and STR Analysis. J Fungi (Basel) 10(11) CGD Papers Entry Pubmed Entry	C. parapsilosis	\|ERG11
*Dunaiski CM, et al.* (2024)** Molecular epidemiology and antimicrobial resistance of vaginal Candida glabrata isolates in Namibia. Med Mycol CGD Papers Entry Pubmed Entry	C. glabrata	\|CDR1 \|ERG6 \|ERG7 \|FKS1 \|FKS2 \|FPS1 \|MSH2 \|PDR1 \|SNQ2
*Fattouh N, et al.* (2024)** Adhesive and biofilm-forming Candida glabrata Lebanese hospital isolates harbour mutations in subtelomeric silencers and adhesins. Mycoses 67(6):e13750 CGD Papers Entry Pubmed Entry	C. glabrata	\|CDR1 \|PDH1 \|PDR1 \|SIR3
*Ghojoghi A, et al.* (2024)** Exploring the diversity of uncommon oral yeast species and associated risk factors among substance abusers in southwestern Iran. Sci Rep 14(1):1906 CGD Papers Entry Pubmed Entry	C. glabrata	\|ITS1 \|ITS2
C. albicans	\|ITS1 \|ITS2
C. dubliniensis	\|ITS1 \|ITS2
*Gnaien M, et al.* (2024)** A gain-of-function mutation in zinc cluster transcription factor Rob1 Drives Candida albicans adaptive growth in the cystic fibrosis lung environment. PLoS Pathog 20(4):e1012154 CGD Papers Entry Pubmed Entry	C. albicans	\|ALS3 \|ECE1 \|HWP1 \|ROB1

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