C. albicans TIM9/C7_03630C Summary

Last curated 2014年06月25日
See the Literature Guide for most recent publications.

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Summary
Locus History Literature Gene Ontology Phenotype Homologs Protein
TIM9 BASIC INFORMATION [ View References ]
Standard Name TIM91
Systematic Name, Reference Strain C7_03630C_A (C. albicans SC5314)
Assembly 19/21 Identifier orf19.6696
Alias orf19.13988, IPF20492.12 , IPF2599.12 , Contig4-3088_00313 , orf6.68054 , CA42982 , CaJ7.04155 , CaO19.139886 , CaJ7_04156 , CaO19_66966 , CaO19.66966 , orf19.6696, C7_03630C_B, C7_03630C
Feature Type ORF, Uncharacterized
Description Predicted protein of the mitochondrial intermembrane space; rat catheter biofilm induced; Spider biofilm repressed (1, 7)
Literature
Allele Name C7_03630C_B
Allelic Variation No allelic variation in feature
CUG Codons C7_03630C_A: 0
C7_03630C_B: 0
Systematic Names Used in Other Strains CAWG_05694 (C. albicans WO-1)
Orthologous genes in Candida species C. auris B8441 Ortholog(s) : B9J08_002112
C. dubliniensis CD36 Ortholog(s) : Cd36_73310
C. parapsilosis CDC317 Ortholog(s) : CPAR2_703850
C. glabrata CBS138 Ortholog(s) : CAGL0H06127g
View ortholog cluster : 19 genes among 19 Candida-related species/strains
Ortholog(s) in non-CGD species A. nidulans (AN7649) ; N. crassa (tim9) ; S. pombe (SPCC24B10.05) ; S. cerevisiae (TIM9)
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JBrowse for feature C7_03630C_A

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GO Annotations View all TIM9 GO evidence and references

Molecular Function
Manually curated * molecular_function unknown (ND)

Biological Process
Manually curated * biological_process unknown (ND)

Cellular Component
Manually curated * cellular_component unknown (ND)
Mutant Phenotype View all TIM9 Phenotype details and references
Large-scale survey
heterozygous null * viable

null * inviable

Sequence Information Ca22chr7A_C_albicans_SC5314:809449 to 809086 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to233809,449to809,2172016年01月21日2014年06月24日
Intron 234to333809,216to809,1172016年01月21日2014年06月24日
CDS 334to364809,116to809,0862016年01月21日2014年06月24日

Retrieve Sequences
Sequence Analysis Tools
Maps & Displays
Sequence Information Ca22chr7A_C_albicans_SC5314:809449 to 809086 | JBrowse
Note: this feature is encoded on the Crick strand.
Allele Location
Allele C7_03630C_B 		Ca22chr7B_C_albicans_SC5314:809480 to 809117 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to233809,480to809,2482016年01月21日2014年06月24日
Intron 234to333809,247to809,1482016年01月21日2014年06月24日
CDS 334to364809,147to809,1172016年01月21日2014年06月24日

Allele Location
Allele C7_03630C_B Ca22chr7B_C_albicans_SC5314:809480 to 809117 | JBrowse
Note: this feature is encoded on the Crick strand.
External Links CGOB | Entrez Gene (1, 2, 3) | Fungal Orthologs | FungiDB | GenBank (1, 2, 3, 4, 5, 6) | Non-periodic Expression | Pedant | PhylomeDB | SwissProt | TrEMBL
Primary CGDID CAL0000177007
ADDITIONAL INFORMATION for TIM9
Gene/Sequence Resources
REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for TIM9]
1) Nett JE, et al. (2009) Time course global gene expression analysis of an in vivo Candida biofilm. J Infect Dis 200(2):307-13
CGD Papers Entry Pubmed Entry Reference LINKOUT Web Supplement
2) CandidaDB
CGD Papers Entry
3) Berman J (2005) Mapping of ORFs in Assembly 4 to those in Assembly 19.
CGD Papers Entry
4) CGD (2005) CGD comparison of orf6 and orf19 predicted protein products.
CGD Papers Entry
5) Chibana H, et al. (2005) Sequence finishing and gene mapping for Candida albicans chromosome 7 and syntenic analysis against the Saccharomyces cerevisiae genome. Genetics 170(4):1525-37
CGD Papers Entry Pubmed Entry Reference LINKOUT
6) Maglott D, et al. (2007) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31
CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT
7) Nobile CJ, et al. (2012) A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell 148(1-2):126-38
CGD Papers Entry Pubmed Entry Reference LINKOUT Data

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