C. albicans TOM40/C7_01970C Summary

Last curated 2022年03月15日
See the Literature Guide for most recent publications.

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Summary
Locus History Literature Gene Ontology Phenotype Homologs Protein
TOM40 BASIC INFORMATION [ View References ]
Standard Name TOM401
Systematic Name, Reference Strain C7_01970C_A (C. albicans SC5314)
Assembly 19/21 Identifier orf19.6524
Alias orf19.13877, IPF20607.12 , IPF4568.12 , Contig4-3089_00473 , Contig4-3089_00483 , orf6.76364 , CA49542 , CaJ7.02245 , CaO19.65246 , CaO19.138776 , CaO19_65246 , CaJ7_02246 , orf19.6524, C7_01970C_B, C7_01970C
Feature Type ORF, Verified
Description Protein involved in mitochondrial protein import; Spider biofilm repressed (1, 7)
Literature
Allele Name C7_01970C_B
Allelic Variation No allelic variation in feature
CUG Codons C7_01970C_A: 0
C7_01970C_B: 0
Systematic Names Used in Other Strains CAWG_05548 (C. albicans WO-1)
Orthologous genes in Candida species C. auris B8441 Ortholog(s) : B9J08_004927
C. parapsilosis CDC317 Ortholog(s) : CPAR2_703020
C. dubliniensis CD36 Ortholog(s) : Cd36_71780
C. glabrata CBS138 Ortholog(s) : CAGL0I05720g
View ortholog cluster : 19 genes among 19 Candida-related species/strains
Ortholog(s) in non-CGD species A. nidulans (AN6510) ; N. crassa (tom40) ; S. pombe (SPBC27B12.13) ; S. cerevisiae (TOM40)
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JBrowse for feature C7_01970C_A

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GO Annotations View all TOM40 GO evidence and references

Molecular Function
Manually curated * molecular_function unknown (ND)

Biological Process
Computational * transmembrane transport (IEA with EBI: Eukaryotic porin/Tom40)

Cellular Component
High-throughput * plasma membrane (IDA)
Computational * mitochondrial outer membrane (IEA with EBI: Tom40, EBI: Eukaryotic porin/Tom40)
Mutant Phenotype View all TOM40 Phenotype details and references
Large-scale survey
heterozygous null * viable

null * inviable

repressible * virulence: absent

Sequence Information Ca22chr7A_C_albicans_SC5314:423401 to 422229 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1173423,401to422,2292016年01月21日2014年06月24日

Retrieve Sequences
Sequence Analysis Tools
Maps & Displays
Sequence Information Ca22chr7A_C_albicans_SC5314:423401 to 422229 | JBrowse
Note: this feature is encoded on the Crick strand.
Allele Location
Allele C7_01970C_B 		Ca22chr7B_C_albicans_SC5314:423408 to 422236 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1173423,408to422,2362016年01月21日2014年06月24日

Allele Location
Allele C7_01970C_B Ca22chr7B_C_albicans_SC5314:423408 to 422236 | JBrowse
Note: this feature is encoded on the Crick strand.
External Links CGOB | Entrez Gene (1, 2, 3) | Fungal Orthologs | FungiDB | GenBank (1, 2, 3, 4, 5, 6, 7, 8) | Non-periodic Expression | Pedant | PhylomeDB | TrEMBL
Primary CGDID CAL0000180112
ADDITIONAL INFORMATION for TOM40
Gene/Sequence Resources
REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for TOM40]
1) Cabezon V, et al. (2009) Analysis of Candida albicans plasma membrane proteome. Proteomics 9(20):4770-86
CGD Papers Entry Pubmed Entry Reference LINKOUT
2) CandidaDB
CGD Papers Entry
3) Berman J (2005) Mapping of ORFs in Assembly 4 to those in Assembly 19.
CGD Papers Entry
4) CGD (2005) CGD comparison of orf6 and orf19 predicted protein products.
CGD Papers Entry
5) Chibana H, et al. (2005) Sequence finishing and gene mapping for Candida albicans chromosome 7 and syntenic analysis against the Saccharomyces cerevisiae genome. Genetics 170(4):1525-37
CGD Papers Entry Pubmed Entry Reference LINKOUT
6) Maglott D, et al. (2007) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31
CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT
7) Nobile CJ, et al. (2012) A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell 148(1-2):126-38
CGD Papers Entry Pubmed Entry Reference LINKOUT Data

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