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POST ga4gh/variantsets/search

Return a list of variant sets in GA4GH format

Parameters

Required

NameTypeDescriptionDefaultExample Values
datasetId String Return variantSets by dataSet Identifier - 6e340c4d1e333c7a676b1710d2e3953c

Optional

NameTypeDescriptionDefaultExample Values
callback String Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. - randomlygeneratedname
pageSize Int Number of variantSets to return per request 10 -
pageToken Int Identifier showing which page of data to retrieve next null -

Message

Content-type Format Example
application/json { "datasetId": string, "pageToken": string, "pageSize": long } { "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }

Example Requests

/ga4gh/variantsets/search


{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }
 
use strict;
use warnings;
use HTTP::Tiny;
my $http = HTTP::Tiny->new();
my $server = 'http://rest.ensembl.org';
my $ext = '/ga4gh/variantsets/search';
my $response = $http->request('POST', $server.$ext, {
 headers => { 
 	'Content-type' => 'application/json',
 	'Accept' => 'application/json'
 },
 content => '{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }'
});
die "Failed!\n" unless $response->{success};
use JSON;
use Data::Dumper;
if(length $response->{content}) {
 my $hash = decode_json($response->{content});
 local $Data::Dumper::Terse = 1;
 local $Data::Dumper::Indent = 1;
 print Dumper $hash;
 print "\n";
}
import requests, sys
server = "http://rest.ensembl.org"
ext = "/ga4gh/variantsets/search"
headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
r = requests.post(server+ext, headers=headers, data='{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }')
if not r.ok:
 r.raise_for_status()
 sys.exit()
decoded = r.json()
print repr(decoded)
import requests, sys
server = "http://rest.ensembl.org"
ext = "/ga4gh/variantsets/search"
headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
r = requests.post(server+ext, headers=headers, data='{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }')
if not r.ok:
 r.raise_for_status()
 sys.exit()
decoded = r.json()
print(repr(decoded))
require 'net/http'
require 'uri'
server='http://rest.ensembl.org'
path = '/ga4gh/variantsets/search'
url = URI.parse(server)
http = Net::HTTP.new(url.host, url.port)
request = Net::HTTP::Post.new(path, {'Content-Type' => 'application/json', 'Accept' => 'application/json'})
request.body = '{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }'
response = http.request(request)
if response.code != "200"
 puts "Invalid response: #{response.code}"
 puts response.body
 exit
end
require 'rubygems'
require 'json'
require 'yaml'
result = JSON.parse(response.body)
puts YAML::dump(result)
import java.net.URL;
import java.net.URLConnection;
import java.net.HttpURLConnection;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.IOException;
import java.io.Reader;
import java.io.DataOutputStream;
public class EnsemblRest {
 public static void main(String[] args) throws Exception {
 String server = "http://rest.ensembl.org";
 String ext = "/ga4gh/variantsets/search";
 URL url = new URL(server + ext);
 URLConnection connection = url.openConnection();
 HttpURLConnection httpConnection = (HttpURLConnection)connection;
 
 String postBody = "{ \"datasetId\": \"6e340c4d1e333c7a676b1710d2e3953c\", \"pageToken\": \"\", \"pageSize\": 2 }";
 httpConnection.setRequestMethod("POST");
 httpConnection.setRequestProperty("Content-Type", "application/json");
 httpConnection.setRequestProperty("Accept", "application/json");
 httpConnection.setRequestProperty("Content-Length", Integer.toString(postBody.getBytes().length));
 httpConnection.setUseCaches(false);
 httpConnection.setDoInput(true);
 httpConnection.setDoOutput(true);
 DataOutputStream wr = new DataOutputStream(httpConnection.getOutputStream());
 wr.writeBytes(postBody);
 wr.flush();
 wr.close();
 
 InputStream response = connection.getInputStream();
 int responseCode = httpConnection.getResponseCode();
 if(responseCode != 200) {
 throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
 }
 String output;
 Reader reader = null;
 try {
 reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
 StringBuilder builder = new StringBuilder();
 char[] buffer = new char[8192];
 int read;
 while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
 builder.append(buffer, 0, read);
 }
 output = builder.toString();
 } 
 finally {
 if (reader != null) try {
 reader.close(); 
 } catch (IOException logOrIgnore) {
 logOrIgnore.printStackTrace();
 }
 }
 System.out.println(output);
 }
}
library(httr)
library(jsonlite)
library(xml2)
server <- "http://rest.ensembl.org"
ext <- "/ga4gh/variantsets/search"
r <- POST(paste(server, ext, sep = ""), content_type("application/json"), accept("application/json"), body = '{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }')
stop_for_status(r)
# use this if you get a simple nested list back, otherwise inspect its structure
# head(data.frame(t(sapply(content(r),c))))
head(fromJSON(toJSON(content(r))))
curl 'http://rest.ensembl.org/ga4gh/variantsets/search' -H 'Content-type:application/json' \
-H 'Accept:application/json' -X POST -d '{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }'
wget -q --header='Content-type:application/json' --header='Accept:application/json' \
--post-data='{ "datasetId": "6e340c4d1e333c7a676b1710d2e3953c", "pageToken": "", "pageSize": 2 }' \
'http://rest.ensembl.org/ga4gh/variantsets/search' -O -

Resource Information

Methods POST
Response formats json
jsonp

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