Definition for Code SystemGenomicStudyDataFormat

<?xml version="1.0" encoding="UTF-8"?>
<CodeSystem xmlns="http://hl7.org/fhir"><id value="genomicstudy-dataformat"/><meta ><lastUpdated value="2023年03月26日T15:21:02.749+11:00"/><profile value="http://hl7.org/fhir/StructureDefinition/shareablecodesystem"/></meta><text ><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p >This code system 
 <code >http://hl7.org/fhir/genomicstudy-dataformat</code> defines the following codes:
 </p><table class="codes"><tr ><td style="white-space:nowrap"><b >Code</b></td><td ><b >Display</b></td></tr><tr ><td style="white-space:nowrap">bam
 <a name="genomicstudy-dataformat-bam"></a></td><td >BAM</td></tr><tr ><td style="white-space:nowrap">bed
 <a name="genomicstudy-dataformat-bed"></a></td><td >BED</td></tr><tr ><td style="white-space:nowrap">bedpe
 <a name="genomicstudy-dataformat-bedpe"></a></td><td >BEDPE</td></tr><tr ><td style="white-space:nowrap">bedgraph
 <a name="genomicstudy-dataformat-bedgraph"></a></td><td >BedGraph</td></tr><tr ><td style="white-space:nowrap">bigbed
 <a name="genomicstudy-dataformat-bigbed"></a></td><td >bigBed</td></tr><tr ><td style="white-space:nowrap">bigWig
 <a name="genomicstudy-dataformat-bigWig"></a></td><td >bigWig</td></tr><tr ><td style="white-space:nowrap">birdsuite-files
 <a name="genomicstudy-dataformat-birdsuite-files"></a></td><td >Birdsuite-Files</td></tr><tr ><td style="white-space:nowrap">broadpeak
 <a name="genomicstudy-dataformat-broadpeak"></a></td><td >broadPeak</td></tr><tr ><td style="white-space:nowrap">cbs
 <a name="genomicstudy-dataformat-cbs"></a></td><td >CBS</td></tr><tr ><td style="white-space:nowrap">chemical-reactivity-probing-profiles
 <a name="genomicstudy-dataformat-chemical-reactivity-probing-profiles"></a></td><td >Chemical-Reactivity-Probing-Profiles</td></tr><tr ><td style="white-space:nowrap">chrom-sizes
 <a name="genomicstudy-dataformat-chrom-sizes"></a></td><td >chrom-sizes</td></tr><tr ><td style="white-space:nowrap">cn
 <a name="genomicstudy-dataformat-cn"></a></td><td >CN</td></tr><tr ><td style="white-space:nowrap">custom-file-formats
 <a name="genomicstudy-dataformat-custom-file-formats"></a></td><td >Custom-File-Formats</td></tr><tr ><td style="white-space:nowrap">cytoband
 <a name="genomicstudy-dataformat-cytoband"></a></td><td >Cytoband</td></tr><tr ><td style="white-space:nowrap">fasta
 <a name="genomicstudy-dataformat-fasta"></a></td><td >FASTA</td></tr><tr ><td style="white-space:nowrap">gct
 <a name="genomicstudy-dataformat-gct"></a></td><td >GCT</td></tr><tr ><td style="white-space:nowrap">cram
 <a name="genomicstudy-dataformat-cram"></a></td><td >CRAM</td></tr><tr ><td style="white-space:nowrap">genepred
 <a name="genomicstudy-dataformat-genepred"></a></td><td >genePred</td></tr><tr ><td style="white-space:nowrap">gff-gtf
 <a name="genomicstudy-dataformat-gff-gtf"></a></td><td >GFF/GTF</td></tr><tr ><td style="white-space:nowrap">gistic
 <a name="genomicstudy-dataformat-gistic"></a></td><td >GISTIC</td></tr><tr ><td style="white-space:nowrap">goby
 <a name="genomicstudy-dataformat-goby"></a></td><td >Goby</td></tr><tr ><td style="white-space:nowrap">gwas
 <a name="genomicstudy-dataformat-gwas"></a></td><td >GWAS</td></tr><tr ><td style="white-space:nowrap">igv
 <a name="genomicstudy-dataformat-igv"></a></td><td >IGV</td></tr><tr ><td style="white-space:nowrap">loh
 <a name="genomicstudy-dataformat-loh"></a></td><td >LOH</td></tr><tr ><td style="white-space:nowrap">maf-multiple-alignment-format
 <a name="genomicstudy-dataformat-maf-multiple-alignment-format"></a></td><td >MAF-Multiple Alignment Format</td></tr><tr ><td style="white-space:nowrap">maf-mutation-annotation-format
 <a name="genomicstudy-dataformat-maf-mutation-annotation-format"></a></td><td >MAF-Mutation-Annotation-Format</td></tr><tr ><td style="white-space:nowrap">merged-bam-file
 <a name="genomicstudy-dataformat-merged-bam-file"></a></td><td >Merged BAM File</td></tr><tr ><td style="white-space:nowrap">mut
 <a name="genomicstudy-dataformat-mut"></a></td><td >MUT</td></tr><tr ><td style="white-space:nowrap">narrowpeak
 <a name="genomicstudy-dataformat-narrowpeak"></a></td><td >narrowPeak</td></tr><tr ><td style="white-space:nowrap">psl
 <a name="genomicstudy-dataformat-psl"></a></td><td >PSL</td></tr><tr ><td style="white-space:nowrap">res
 <a name="genomicstudy-dataformat-res"></a></td><td >RES</td></tr><tr ><td style="white-space:nowrap">rna-secondary-structure-formats
 <a name="genomicstudy-dataformat-rna-secondary-structure-formats"></a></td><td >RNA-Secondary-Structure-Formats</td></tr><tr ><td style="white-space:nowrap">sam
 <a name="genomicstudy-dataformat-sam"></a></td><td >SAM</td></tr><tr ><td style="white-space:nowrap">sample-info-attributes-file
 <a name="genomicstudy-dataformat-sample-info-attributes-file"></a></td><td >Sample-Info-Attributes-file</td></tr><tr ><td style="white-space:nowrap">seg
 <a name="genomicstudy-dataformat-seg"></a></td><td >SEG</td></tr><tr ><td style="white-space:nowrap">tdf
 <a name="genomicstudy-dataformat-tdf"></a></td><td >TDF</td></tr><tr ><td style="white-space:nowrap">track-line
 <a name="genomicstudy-dataformat-track-line"></a></td><td >Track Line</td></tr><tr ><td style="white-space:nowrap">type-line
 <a name="genomicstudy-dataformat-type-line"></a></td><td >Type Line</td></tr><tr ><td style="white-space:nowrap">vcf
 <a name="genomicstudy-dataformat-vcf"></a></td><td >VCF</td></tr><tr ><td style="white-space:nowrap">wig
 <a name="genomicstudy-dataformat-wig"></a></td><td >WIG</td></tr></table></div></text><extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"><valueCode value="cg"/></extension><extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"><valueCode value="trial-use"/></extension><extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"><valueInteger value="1"/></extension><url value="http://hl7.org/fhir/genomicstudy-dataformat"/><identifier ><system value="urn:ietf:rfc:3986"/><value value="urn:oid:2.16.840.1.113883.4.642.4.1978"/></identifier><version value="5.0.0"/><name value="GenomicStudyDataFormat"/><title value="Genomic Study Data Format"/><status value="active"/><experimental value="true"/><date value="2022年08月17日T14:49:24-05:00"/><publisher value="HL7 (FHIR Project)"/><contact ><telecom ><system value="url"/><value value="http://hl7.org/fhir"/></telecom><telecom ><system value="email"/><value value="fhir@lists.hl7.org"/></telecom></contact><description value="The data format relevant to genomics. These formats and relevant codes were pulled
 from [Integrative Genomics Viewer Documentation](https://software.broadinstitute.org/software
 /igv/FileFormats) by Broad Institute."/><jurisdiction ><coding ><system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/><code value="001"/><display value="World"/></coding></jurisdiction><caseSensitive value="true"/><valueSet value="http://hl7.org/fhir/ValueSet/genomicstudy-dataformat"/><content value="complete"/><concept ><code value="bam"/><display value="BAM"/></concept><concept ><code value="bed"/><display value="BED"/></concept><concept ><code value="bedpe"/><display value="BEDPE"/></concept><concept ><code value="bedgraph"/><display value="BedGraph"/></concept><concept ><code value="bigbed"/><display value="bigBed"/></concept><concept ><code value="bigWig"/><display value="bigWig"/></concept><concept ><code value="birdsuite-files"/><display value="Birdsuite-Files"/></concept><concept ><code value="broadpeak"/><display value="broadPeak"/></concept><concept ><code value="cbs"/><display value="CBS"/></concept><concept ><code value="chemical-reactivity-probing-profiles"/><display value="Chemical-Reactivity-Probing-Profiles"/></concept><concept ><code value="chrom-sizes"/><display value="chrom-sizes"/></concept><concept ><code value="cn"/><display value="CN"/></concept><concept ><code value="custom-file-formats"/><display value="Custom-File-Formats"/></concept><concept ><code value="cytoband"/><display value="Cytoband"/></concept><concept ><code value="fasta"/><display value="FASTA"/></concept><concept ><code value="gct"/><display value="GCT"/></concept><concept ><code value="cram"/><display value="CRAM"/></concept><concept ><code value="genepred"/><display value="genePred"/></concept><concept ><code value="gff-gtf"/><display value="GFF/GTF"/></concept><concept ><code value="gistic"/><display value="GISTIC"/></concept><concept ><code value="goby"/><display value="Goby"/></concept><concept ><code value="gwas"/><display value="GWAS"/></concept><concept ><code value="igv"/><display value="IGV"/></concept><concept ><code value="loh"/><display value="LOH"/></concept><concept ><code value="maf-multiple-alignment-format"/><display value="MAF-Multiple Alignment Format"/></concept><concept ><code value="maf-mutation-annotation-format"/><display value="MAF-Mutation-Annotation-Format"/></concept><concept ><code value="merged-bam-file"/><display value="Merged BAM File"/></concept><concept ><code value="mut"/><display value="MUT"/></concept><concept ><code value="narrowpeak"/><display value="narrowPeak"/></concept><concept ><code value="psl"/><display value="PSL"/></concept><concept ><code value="res"/><display value="RES"/></concept><concept ><code value="rna-secondary-structure-formats"/><display value="RNA-Secondary-Structure-Formats"/></concept><concept ><code value="sam"/><display value="SAM"/></concept><concept ><code value="sample-info-attributes-file"/><display value="Sample-Info-Attributes-file"/></concept><concept ><code value="seg"/><display value="SEG"/></concept><concept ><code value="tdf"/><display value="TDF"/></concept><concept ><code value="track-line"/><display value="Track Line"/></concept><concept ><code value="type-line"/><display value="Type Line"/></concept><concept ><code value="vcf"/><display value="VCF"/></concept><concept ><code value="wig"/><display value="WIG"/></concept></CodeSystem>