This page is part of the FHIR Specification (v5.0.0: R5 - STU). This is the current published version in it's permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
Raw XML (canonical form + also see XML Format Specification)
MolecularSequence example for long fusion RNA molecule of FGFR and MET (id = "seq-ordinal")
<?xml version="1.0" encoding="UTF-8"?> <MolecularSequence xmlns="http://hl7.org/fhir"><id value="seq-ordinal"/><text ><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p ><b >Generated Narrative: MolecularSequence</b><a name="seq-ordinal"></a></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource MolecularSequence "seq-ordinal" </p></div><p ><b >type</b>: rna</p><blockquote ><p ><b >relative</b></p><p ><b >coordinateSystem</b>: 1-based character counting <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://loinc.org/">LOINC</a>#LA30102-0)</span></p><p ><b >ordinalPosition</b>: 1</p><p ><b >sequenceRange</b>: 1-2194</p><h3 >StartingSequences</h3><table class="grid"><tr ><td >-</td><td ><b >Sequence[x]</b></td><td ><b >WindowStart</b></td><td ><b >WindowEnd</b></td></tr><tr ><td >*</td><td >NM_000141.5 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (#NM_000141.5)</span></td><td >1</td><td >2194</td></tr></table></blockquote><blockquote ><p ><b >relative</b></p><p ><b >coordinateSystem</b>: 1-based character counting <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://loinc.org/">LOINC</a>#LA30102-0)</span></p><p ><b >ordinalPosition</b>: 2</p><p ><b >sequenceRange</b>: 2194-4899</p><h3 >StartingSequences</h3><table class="grid"><tr ><td >-</td><td ><b >Sequence[x]</b></td><td ><b >WindowStart</b></td><td ><b >WindowEnd</b></td></tr><tr ><td >*</td><td >NM_000245.4 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (#NM_000245.4)</span></td><td >1923</td><td >6822</td></tr></table></blockquote></div></text><type value="rna"/><relative ><coordinateSystem ><coding ><system value="http://loinc.org"/><code value="LA30102-0"/><display value="1-based character counting"/></coding></coordinateSystem><ordinalPosition value="1"/><sequenceRange ><low ><valuevalue="1"/></low><high ><valuevalue="2194"/></high></sequenceRange><startingSequence ><sequenceCodeableConcept ><coding><systemvalue="http://www.ncbi.nlm.nih.gov/nuccore/"/><codevalue="NM_000141.5"/></coding></sequenceCodeableConcept><windowStart value="1"/><windowEnd value="2194"/></startingSequence><!-- specific edits would be here --></relative><relative ><coordinateSystem ><coding ><system value="http://loinc.org"/><code value="LA30102-0"/><display value="1-based character counting"/></coding></coordinateSystem><ordinalPosition value="2"/><sequenceRange ><low ><valuevalue="2194"/></low><high ><valuevalue="4899"/></high></sequenceRange><startingSequence ><sequenceCodeableConcept ><coding><systemvalue="http://www.ncbi.nlm.nih.gov/nuccore/"/><codevalue="NM_000245.4"/></coding></sequenceCodeableConcept><windowStart value="1923"/><windowEnd value="6822"/></startingSequence><!-- specific edits would be here --></relative></MolecularSequence>
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.