This page is part of the FHIR Specification (v5.0.0: R5 - STU). This is the current published version in it's permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3
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Example of a record with 1-based coordinatesystem
@prefix fhir: <http://hl7.org/fhir/> . @prefix loinc: <https://loinc.org/rdf/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- [a fhir:MolecularSequence ; fhir:nodeRole fhir:treeRoot ; fhir:id [ fhir:v "coord-1-base"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: MolecularSequence</b><a name=\"coord-1-base\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource MolecularSequence "coord-1-base" </p></div><p><b>type</b>: dna</p><blockquote><p><b>relative</b></p><p><b>coordinateSystem</b>: 1-based character counting <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA30102-0)</span></p><h3>StartingSequences</h3><table class=\"grid\"><tr><td>-</td><td><b>Sequence[x]</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td><td><b>Strand</b></td></tr><tr><td>*</td><td>ACGTAGTC</td><td>1</td><td>8</td><td>watson</td></tr></table><blockquote><p><b>edit</b></p><p><b>start</b>: 2</p><p><b>end</b>: 3</p><p><b>replacementSequence</b>: ATG</p><p><b>replacedSequence</b>: -</p></blockquote><blockquote><p><b>edit</b></p><p><b>start</b>: 5</p><p><b>end</b>: 5</p><p><b>replacementSequence</b>: T</p><p><b>replacedSequence</b>: A</p></blockquote><blockquote><p><b>edit</b></p><p><b>start</b>: 7</p><p><b>end</b>: 7</p><p><b>replacementSequence</b>: -</p><p><b>replacedSequence</b>: T</p></blockquote></blockquote></div>" ] ; # fhir:type [ fhir:v "dna"] ; # fhir:relative ( [ fhir:coordinateSystem [ fhir:coding ( [ a loinc:LA30102-0 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "LA30102-0" ] ; fhir:display [ fhir:v "1-based character counting" ] ] ) ] ; fhir:startingSequence [ fhir:sequence [ fhir:v "ACGTAGTC" ] ; fhir:windowStart [ fhir:v "1"^^xsd:integer ] ; fhir:windowEnd [ fhir:v "8"^^xsd:integer ] ; fhir:strand [ fhir:v "watson" ] ] ; fhir:edit ( [ fhir:start [ fhir:v "2"^^xsd:integer ] ; fhir:end [ fhir:v "3"^^xsd:integer ] ; fhir:replacementSequence [ fhir:v "ATG" ] ; fhir:replacedSequence [ fhir:v "-" ] ] [ fhir:start [ fhir:v "5"^^xsd:integer ] ; fhir:end [ fhir:v "5"^^xsd:integer ] ; fhir:replacementSequence [ fhir:v "T" ] ; fhir:replacedSequence [ fhir:v "A" ] ] [ fhir:start [ fhir:v "7"^^xsd:integer ] ; fhir:end [ fhir:v "7"^^xsd:integer ] ; fhir:replacementSequence [ fhir:v "-" ] ; fhir:replacedSequence [ fhir:v "T" ] ] ) ] )] . # # -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.