Sequence-example-TPMT-two.xml

Example of another TPMT SNP data that support a haplotype observation (id = "example-TPMT-two")

<?xml version="1.0" encoding="UTF-8"?>
<MolecularSequence xmlns="http://hl7.org/fhir"><id value="example-TPMT-two"/><text ><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p ><b >Generated Narrative</b></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px
 solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource &quot;example-TPMT-two&quot; </p></div><p ><b >type</b>: dna</p><p ><b >coordinateSystem</b>: 1</p><p ><b >patient</b>: <a href="patient-example.html">Patient/example</a> &quot;Peter CHALMERS&quot;</p><h3 >ReferenceSeqs</h3><table class="grid"><tr ><td >-</td><td ><b >ReferenceSeqId</b></td><td ><b >Strand</b></td><td ><b >WindowStart</b></td><td ><b >WindowEnd</b></td></tr><tr ><td >*</td><td >NT_007592.15 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (nuccore#NT_007592.15)</span></td><td >watson</td><td >18130918</td><td >18143955</td></tr></table><h3 >Variants</h3><table class="grid"><tr ><td >-</td><td ><b >Start</b></td><td ><b >End</b></td><td ><b >ObservedAllele</b></td><td ><b >ReferenceAllele</b></td></tr><tr ><td >*</td><td >18131012</td><td >18131012</td><td >T</td><td >C</td></tr></table><p ><b >observedSeq</b>: T-C-T-C-G-C-C-C</p></div></text><type value="dna"/><coordinateSystem value="1"/><patient ><reference value="Patient/example "/></patient><referenceSeq ><referenceSeqId ><coding ><system value="http://www.ncbi.nlm.nih.gov/nuccore"/><code value="NT_007592.15"/></coding></referenceSeqId><strand value="watson"/><windowStart value="18130918"/><windowEnd value="18143955"/></referenceSeq><variant ><start value="18131012"/><end value="18131012"/><observedAllele value="T"/><referenceAllele value="C"/></variant><observedSeq value="T-C-T-C-G-C-C-C"/></MolecularSequence>