General information of database
info Alternative name Annotation of Beta-Barrel Membrane Proteins in Genomic Sequences
info Creator
Creator Name:
Michael Gromiha
Creator Affiliation:
Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology
info Contact address Dr. M. MICHAEL GROMIHA
Associate Professor
Department of Biotechnology
IIT Madras
Chennai - 600 036
Tel: +91-44-2257-4138(O)
E-mail: rgp_gmap_address
http://www.iitm.ac.in/bioinfo/Gromiha/
info Database classification Protein sequence databases - Protein properties
info Database description TMBETA-GENOME is a database for transmembrane β-barrel proteins in complete genomes. For each genome, calculations with machine learning algorithms and statistical methods have been perfumed and the annotation results are accumulated in the database.
info Features and manner of utilization of database Users can download lists of sequences predicted as β-barrel membrane proteins in FASTA format, which can be used for further analysis. The site also provides prediction tools, such as "TMBETA-DISC" and "TMBETA-SVM", which can discriminate transmembrane β-barrel proteins by inputting amino acid sequences. (These tools are not available in the LSDB Archive.)
info Background and funding -
info Reference(s)
Article title:
TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences.
Author name(s):
Gromiha MM, Yabuki Y, Kundu S, Suharnan S, Suwa M.
Journal:
Nucleic Acids Res. 2007 Jan;35(Database issue):D314-6. Epub 2006 Nov 6.
External Links:
Link to PubMed
Link to J-GLOBAL
Original website information
info URL of the original website -
info Operation start date -
info Last update date -
info Whole data download -
info Referenced database NCBI, Ensembl
info Entry list Available
info Query search Available
info Web services Not available
info URL of Web services -
info Need for user registration Not available