Life Science Database Archive
Open TG-GATEs

Individual list

Data detail

info Data name Individual list
info DOI
info Description of data contents

The list of rats from which gene expression and toxicity data were acquired.

info Data file
File name:
open_tggates_individual.zip
File size:
97 KB
info Simple search URL
info Data acquisition method

-

info Data analysis method

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info Number of data entries

23,868 entries

Data itemDescription
EXP_ID ID assigned to each test which can be indentified by a combination of COMPOUND_NAME, SPECIES, EXP_TEST_TYPE, and SINGLE_REPEAT_TYPE. IDs for in vivo tests are assigned from #0040. IDs for in vitro tests are assigned from #5000.
GROUP_ID ID assigned to each group which can be indentified by a combination of DOSE_LEVEL and SACRIFICE_PERIOD. IDs are in double digits. (e.g. 01, 16)
INDIVIDUAL_ID ID assigned to each individual within a group. IDs are in single digit.
COMPOUND_NAME Compound name
SINGLE_REPEAT_TYPE Type of in vivo test. Single-dose test or 28-day repeat-dose test.
SEX_TYPE Gender. Male or Female.
STRAIN_TYPE Rat strain used with in vivo tests
ADMINISTRATION_ROUTE_TYPE Administration route
ANIMAL_AGE(week) Age of animal (weeks). Only rats at 6 weeks of age were used.
SACRIFICE_PERIOD Sampling time or period on in vivo test.
DOSE Dose
DOSE_UNIT Unit of dose
DOSE_LEVEL Dose level. The ascending order of the levels is Control, Low, Middle, High.
BARCODE (Liver) Link to "CEL file attributes (Liver)"
BARCODE (Kidney) Link to "CEL file attributes (Kidney)"
HEMATOLOGY Link to "Hematology"
BIOCHEMISTRY Link to "Biochemistry"
ORGAN_WEIGHT Link to "Organ weight"
BODY_WEIGHT Link to "Body weight"
FOOD_CONSUMPTION Link to "Food consumption"
PATHOLOGY (Liver) Link to "Pathological items (Liver)"
PATHOLOGY (Kidney) Link to "Pathological items (Kidney)"
PATHOLOGICAL_IMAGE (Liver) Link to "Pathological images (Liver)"
PATHOLOGICAL_IMAGE (Kidney) Link to "Pathological images (Kidney)"

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