Life Science Database Archive
Open TG-GATEs Pathological Image Database

Pathological Image Information

Data detail

info Data name Pathological Image Information
info DOI
info Description of data contents

Information regarding each high-resolution digital image in the "Pathological Images (SVS format)" section.

info Data file
info Simple search URL
info Data acquisition method

Information entered into the digital slide scanner while scanning the slides.

info Data analysis method

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info Number of data entries

52,879 entries

Data itemDescription
EXP_ID ID assigned to each test which is defined mainly as a combination of COMPOUND_NAME, SPECIES, EXP_TEST_TYPE, and SINGLE_REPEAT_TYPE. IDs for in vivo tests are #0040 or larger.
GROUP_ID ID assigned to each group which is defined mainly as a combination of DOSE_LEVEL and SACRIFICE_PERIOD. IDs are in double digits. (e.g. 01, 16)
INDIVIDUAL_ID ID assigned to each individual within a group. IDs are in single digit.
COMPOUND_NAME Compound name
ORGAN Organs evaluated in tests. Liver or Kidney.
FILE_LOCATION FTP server path to the pathological images.
CAPTURE_NO/NO_OF_SAMPLE(n/n) The sequence number of scanned images with the total number. 1/2 means that 2 glass slides were scanned for an organ and that the image is the first one.
SPECIES Species
SINGLE_REPEAT_TYPE Type of in vivo test. Single-dose test or 28-day repeat-dose test.
ADMINISTRATION_ROUTE_TYPE Administration route
ANIMAL_AGE(week) Age of animal (weeks).
SACRIFICE_PERIOD Sampling time or period on in vivo test.
DOSE Dose
DOSE_UNIT Unit of dose

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