General information of database
info Alternative name Functional RNA Database
info Creator
Creator Name:
Toutai Mituyama
Link to J-GLOBAL
Link to researchmap
Link to ORCID
Creator Affiliation:
National Institute of Advanced Industrial Science and Technology (AIST)
Creator Name:
Kiyoshi Asai
Link to J-GLOBAL
Link to researchmap
Creator Affiliation:
The University of Tokyo, Department of Frontier Sciences
info Contact address Toutai Mituyama:
info Database classification RNA sequence databases
info Organism 32,978 species
info Database description fRNAdb is a novel database service that hosts a large collection of non-coding transcripts including annotated/non-annotated sequences from the H-inv database,
NONCODE and RNAdb. A set of computational analyses have been performed on the included sequences. These analyses include RNA secondary structure motif discovery, EST support evaluation, cis-regulatory element search, protein homology search, etc.
info Features and manner of utilization of database fRNAdb provides an efficient interface to help users filter out particular transcripts under their own criteria to sort out functional RNA candidates.
info Background and funding
Name:
NEDO "Functional RNA Project" (2006-2010)
Link to Life science projects in Japan
info Reference(s)
Article title:
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences
Author name(s):
Kin T, Yamada K, Terai G, Okida H, Yoshinari Y, Ono Y, Kojima A, Kimura Y, Komori T, Asai K.
Journal:
Nucleic Acids Research/2007/D145-8
External Links:
Link to PubMed
Link to J-GLOBAL
Article title:
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs.
Author name(s):
Mituyama T, Yamada K, Hattori E, Okida H, Ono Y, Terai G, Yoshizawa A, Komori T, Asai K.
Journal:
Nucleic Acids Research/2009/D89-92
External Links:
Link to PubMed
Link to J-GLOBAL
Original website information
info URL of the original website (Closed) http://www.ncrna.org/
info Operation start date 2006/12
info Last update date 2011
info URL of the portal site -
info Whole data download -
info Referenced database -
info Entry list -
info Query search -
info Web services -
info URL of Web services -
info Need for user registration -