Life Science Database Archive
fRNAdb

Database Description

General information of database

info Database name fRNAdb
info Alternative name Functional RNA Database
info Creator
Creator Name:
Creator Affiliation:
National Institute of Advanced Industrial Science and Technology (AIST)
Journal Search:
Creator Name:
Creator Affiliation:
The University of Tokyo, Department of Frontier Sciences
Journal Search:
info Contact address

Toutai Mituyama:

info Database classification RNA sequence databases
info Organism

32,978 species

info Database description

fRNAdb is a novel database service that hosts a large collection of non-coding transcripts including annotated/non-annotated sequences from the H-inv database,
NONCODE and RNAdb. A set of computational analyses have been performed on the included sequences. These analyses include RNA secondary structure motif discovery, EST support evaluation, cis-regulatory element search, protein homology search, etc.

info Features and manner of utilization of database

fRNAdb provides an efficient interface to help users filter out particular transcripts under their own criteria to sort out functional RNA candidates.

info License CC BY-SA Detail
info Background and funding
Name:
NEDO "Functional RNA Project" (2006-2010)
info Reference(s)
Article title:
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences
Author name(s):
Kin T, Yamada K, Terai G, Okida H, Yoshinari Y, Ono Y, Kojima A, Kimura Y, Komori T, Asai K.
Journal:
Nucleic Acids Research/2007/D145-8
Article title:
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs.
Author name(s):
Mituyama T, Yamada K, Hattori E, Okida H, Ono Y, Terai G, Yoshizawa A, Komori T, Asai K.
Journal:
Nucleic Acids Research/2009/D89-92

Original website information

info Database maintenance site


*The original website was terminated.

info URL of the original website (Closed) http://www.ncrna.org/
info Operation start date 2006/12
info Last update date 2011
info URL of the portal site -
info Whole data download -
info Referenced database

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info Entry list -
info Query search -
info Web services -
info URL of Web services -
info Need for user registration -

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