The summary of CAGEscan experiments assembled in every DNA sequence library
CAGEscan (http://fantom.gsc.riken.jp/protocols/nanocage.html )
61 entries
| Data item | Description |
|---|---|
| Library ID | DNA sequence library ID |
| Raw | Measured reads |
| Removed by extraction | Removed reads by extraction |
| Extracted | Extracted reads by analysis |
| Removed by artifacts | Removed artifatcts |
| Filtered for artifact | Reads filterd for artifacts |
| Removed by rRNA | Removed reads as rRNA |
| Filtered for rRNA | Reads filterd for rRNAs |
| Non alignment | Reads not mapped on genome |
| Genome mapped | Reads mapped on genome |
| Duplicated | Duplicated reads |
| Uniquely mapped | Unique reads |
| Inproperly mapped pairs | Read pairs inproperly mapped on genome |
| Properly mapped pairs | Read pairs properly mapped on genome |
| Total pairs | Total pairs |
| Exon | Pairs on exon |
| Intergenic | Pairs on intergenic |
| Promoter | Pairs on promoter |