Life Science Database Archive
dbQSNP

Sequence Data

Data detail

info Data name Sequence Data
info DOI
info Description of data contents

SNPs and their flanking sequences were determined by Sanger sequencing of PCR products amplified from randomly picked Japanese individuals (in most cases, eight individuals).

info Data file
File name:
dbqsnp_fasta.zip
File size:
1.0 MB
info Simple search URL
info Data acquisition method

SNPs were identified by Phred/Phrap/Polyphred (http://www.phrap.org/; http://droog.gs.washington.edu/polyphred/) and visual inspection. Insertions/deletions were detected by software developed by us (Miura et al. JP-4009481-B2).

info Data analysis method

SNPs newly detected in this study was submitted to dbSNP under the handle name "KYUGEN".

info Number of data entries

10,848 entries

Data itemDescription
dbQSNP_id dbQSNP ID.
allele_Pos Variation allele position (1st base of variation) on the fasta sequence. It is always the 5' length plus 1.
total_Len Total number of bases of the fasta sequence, a sum of length of 5', 3' and variation (A length of variation can be more than 1 in the case of ins/del polymorphisms).
Internal_STS_ID Internal STS ID
alleles Lists alleles of the SNP separated by '/'.
sequence Sequence

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