A list of metadata to generate file paths of analysis provided on ChIP-Atlas, target gene analysis and colocalization analysis. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc
A list is generated from our result of analysis based on bed files processed by our pipeline.
See details of data processing here: https://github.com/inutano/chip-atlas/wiki
4,249 entries
| Data item | Description |
|---|---|
| Antigen | Antigen |
| Cell type class in Colocalization | Cell type class in Colocalization (comma separated) |
| Recorded (+) or not (-) in Target Genes | Target gene analysis performed or not (+/-) |
| Genome assembly | Genome assembly |
| Target Genes (TSS ±1k) | Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 1 kb of each TSS (transcription start site). |
| Target Genes (TSS ±5k) | Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 5 kb of each TSS (transcription start site). |
| Target Genes (TSS ±10k) | Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 10 kb of each TSS (transcription start site). |
| Colocalization (TSV) | Link to a TSV (Tab-Separeted Values) file that describes the protein colocalization with the given antigen in the given cell type class. |
| Colocalization (GML) | Link to a GML (Graph Modelling Language) file that describes the protein colocalization in the given cell type class. |