A list of metadata of the reanalysed ChIP-Seq data archived in Sequence Read Archive (SRA), grouped by SRA Experiment ID, providing the information of reference genome data, antigen, or cell type. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc
We have processed data downloaded from SRA by using a standard ChIP-Seq data analysis pipeline, then we curated metadata of archived data manually.
See details of data processing here: https://github.com/inutano/chip-atlas/wiki
439,593 entries
| Data item | Description |
|---|---|
| Experimental ID | Experimental ID (SRX, ERX, DRX) |
| Genome assembly | Genome assembly |
| Antigen class | Antigen class |
| Antigen | Antigen |
| Cell type class | Cell type class |
| Cell type | Cell type |
| Cell type description | Cell type description |
| Processing logs | Processing logs (# of reads, % mapped, % duplicates, # of peaks [q < 1E-05]) |
| Title | Title submitted by authors |
| Meta data | Meta data submitted by authors |
| BigWig | Link to a BigWig-formatted coverage score binary file. |
| Peak-call (BED) (q < 1E-05) | Link to a BED4-formatted peak-call data file with the q-value threshold 1E-05. |
| Peak-call (BED) (q < 1E-10) | Link to a BED4-formatted peak-call data file with the q-value threshold 1E-10. |
| Peak-call (BED) (q < 1E-20) | Link to a BED4-formatted peak-call data file with the q-value threshold 1E-20. |
| Peak-call (BigBed) (q < 1E-05) | Link to a BigBed-formatted peak-call data file binarized from the corresponding BED4 file (q < 1E-05). |
| Peak-call (BigBed) (q < 1E-10) | Link to a BigBed-formatted peak-call data file binarized from the corresponding BED4 file (q < 1E-10). |
| Peak-call (BigBed) (q < 1E-20) | Link to a BigBed-formatted peak-call data file binarized from the corresponding BED4 file (q < 1E-20). |