Quality Control Metrics for Gene Signatures [R package sigQC version 0.1.24]

sigQC: Quality Control Metrics for Gene Signatures

Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics.

Version: 0.1.24

Depends: R (≥ 3.3.0)

Imports: MASS, lattice, KernSmooth, cluster, nnet, class, gridGraphics, biclust, gplots, ComplexHeatmap, fmsb, moments, grDevices, graphics, stats, utils, mclust, GSVA, circlize

Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), RankProd

Published: 2024年08月18日

DOI: 10.32614/CRAN.package.sigQC

Author: Andrew Dhawan [aut, cre], Alessandro Barberis [aut], Wei-Chen Cheng [aut], Francesca Buffa [aut, ths]

Maintainer: Andrew Dhawan <adhawan at qmed.ca>

License: GPL (≥ 3)

NeedsCompilation: no

Citation: sigQC citation info

Materials: README

CRAN checks: sigQC results

Documentation:

Reference manual: sigQC.html , sigQC.pdf

Vignettes: "sigQC: Gene Signature Quality Control" (source, R code)

Downloads:

Package source: sigQC_0.1.24.tar.gz

Windows binaries: r-devel: sigQC_0.1.24.zip, r-release: sigQC_0.1.24.zip, r-oldrel: sigQC_0.1.24.zip

macOS binaries: r-release (arm64): sigQC_0.1.24.tgz, r-oldrel (arm64): sigQC_0.1.24.tgz, r-release (x86_64): sigQC_0.1.24.tgz, r-oldrel (x86_64): sigQC_0.1.24.tgz

Old sources: sigQC archive

Linking:

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