R Interface to Stan [R package rstan version 2.32.7]

rstan: R Interface to Stan

User-facing R functions are provided to parse, compile, test, estimate, and analyze Stan models by accessing the header-only Stan library provided by the 'StanHeaders' package. The Stan project develops a probabilistic programming language that implements full Bayesian statistical inference via Markov Chain Monte Carlo, rough Bayesian inference via 'variational' approximation, and (optionally penalized) maximum likelihood estimation via optimization. In all three cases, automatic differentiation is used to quickly and accurately evaluate gradients without burdening the user with the need to derive the partial derivatives.

Version: 2.32.7

Depends: R (≥ 3.4.0), StanHeaders (≥ 2.32.0)

Imports: methods, stats4, inline (≥ 0.3.19), gridExtra (≥ 2.3), Rcpp (≥ 1.0.7), RcppParallel (≥ 5.1.4), loo (≥ 2.4.1), pkgbuild (≥ 1.2.0), QuickJSR, ggplot2 (≥ 3.3.5)

LinkingTo: Rcpp (≥ 1.0.7), RcppEigen (≥ 0.3.4.0.0), BH (≥ 1.75.0-0), StanHeaders (≥ 2.32.0), RcppParallel (≥ 5.1.4)

Suggests: testthat (≥ 3.0.4), parallel, KernSmooth, shinystan, bayesplot, rmarkdown, rstantools, rstudioapi, Matrix, knitr, coda, V8

Published: 2025年03月10日

DOI: 10.32614/CRAN.package.rstan

Author: Jiqiang Guo [aut], Jonah Gabry [aut], Ben Goodrich [cre, aut], Andrew Johnson [aut], Sebastian Weber [aut], Hamada S. Badr ORCID iD [aut], Daniel Lee [ctb], Krzysztof Sakrejda [ctb], Modrak Martin [ctb], Trustees of Columbia University [cph], Oleg Sklyar [cph] (R/cxxfunplus.R), The R Core Team [cph] (R/pairs.R, R/dynGet.R), Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R), John Maddock [cph] (gamma.hpp), Paul Bristow [cph] (gamma.hpp), Nikhar Agrawal [cph] (gamma.hpp), Christopher Kormanyos [cph] (gamma.hpp), Bronder Steve [ctb]

Maintainer: Ben Goodrich <benjamin.goodrich at columbia.edu>

BugReports: https://github.com/stan-dev/rstan/issues/

License: GPL (≥ 3)

URL: https://mc-stan.org/rstan/, https://discourse.mc-stan.org

NeedsCompilation: yes

SystemRequirements: GNU make, pandoc

Citation: rstan citation info

Materials: NEWS

In views: Bayesian, MixedModels

CRAN checks: rstan results

Documentation:

Reference manual: rstan.html , rstan.pdf

Vignettes: Simulation Based Calibration (source, R code)
Interfacing with External C++ Code (source, R code)
RStan (source, R code)
stanfit objects (source, R code)

Downloads:

Package source: rstan_2.32.7.tar.gz

Windows binaries: r-devel: rstan_2.32.7.zip, r-release: rstan_2.32.7.zip, r-oldrel: rstan_2.32.7.zip

macOS binaries: r-release (arm64): rstan_2.32.7.tgz, r-oldrel (arm64): rstan_2.32.7.tgz, r-release (x86_64): rstan_2.32.7.tgz, r-oldrel (x86_64): rstan_2.32.7.tgz

Old sources: rstan archive

Reverse dependencies:

Reverse depends: banocc, BASiCStan, BayesianPlatformDesignTimeTrend, bayesvl, bmscstan, clinDR, DrBats, edstan, evidence, GPP, GPRMortality, HCT, iCARH, JMbayes, MADPop, MIXFIM, ppcseq, RStanTVA, tmbstan, varian, walker

Reverse imports: adnuts, AovBay, baggr, bakR, baldur, bayclumpr, bayes4psy, bayesdfa, bayesforecast, BayesGmed, BayesGP, BayesGrowth, BayesianFitForecast, bayeslist, BayesSenMC, bayesZIB, bbmix, beanz, beastt, BeeGUTS, bellreg, bennu, Bernadette, bin2norm, BINtools, bistablehistory, bkmrhat, blavaan, bmgarch, bmggum, bmlm, bmstdr, bnns, BPrinStratTTE, breathteststan, brms, brxx, bsitar, bsynth, bws, CARME, catalytic, CausalQueries, cbq, cellmig, cloneRate, ClustIRR, CNVRG, conStruct, ctsem, dclone, DCPO, decontX, densEstBayes, disbayes, dynamite, EcoEnsemble, eDNAjoint, eggCounts, EloSteepness, EpiNow2, EpiPvr, expertsurv, fcirt, fkbma, FlexReg, flps, footBayes, gastempt, geostan, glmmfields, glmmPen, glmmrBase, greencrab.toolkit, GUD, hbamr, hBayesDM, HeckmanStan, historicalborrowlong, hmde, hsstan, HuraultMisc, hwep, IgGeneUsage, imt, intervalpsych, isotracer, jfa, lgpr, llbayesireg, LMMELSM, MCMCvis, measr, metaBMA, MetaboDynamics, MetaStan, miniLNM, MIRES, mlts, morseTKTD, mrbayes, multinma, MultiNMix, multipleDL, mvgam, neodistr, networkscaleup, OncoBayes2, oncomsm, parTimeROC, pcFactorStan, pema, phacking, phylopairs, pivmet, PoolTestR, ProbBreed, prome, prophet, psBayesborrow, publipha, R2D2ordinal, rater, RBesT, rbioacc, rcbayes, RegDDM, Rlgt, rmBayes, rmsb, rmstBayespara, RoBTT, rPBK, rstanarm, rstanbdp, rstanemax, rts2, saeHB.TF.beta, scMET, serofoi, serosv, shinybrms, shinystan, SLGP, SMNlmec, spsurv, ssMousetrack, SSNbayes, StanMoMo, surveil, survextrap, survstan, thurstonianIRT, tipsae, trialr, TriDimRegression, truncnormbayes, tsnet, ubms, vacalibration, WhiteLabRt, winputall, YPBP, YPPE, ZIHINAR1, zoid

Reverse linking to: AovBay, baggr, bakR, baldur, BASiCStan, bayes4psy, bayesdfa, bayesforecast, BayesGmed, BayesGrowth, BayesianPlatformDesignTimeTrend, bayeslist, BayesSenMC, bayesZIB, bbmix, beanz, beastt, BeeGUTS, bellreg, bennu, Bernadette, BINtools, bistablehistory, blavaan, bmgarch, bmggum, bmlm, bmstdr, BPrinStratTTE, breathteststan, bsynth, bws, CARME, CausalQueries, cbq, cellmig, cloneRate, ClustIRR, CNVRG, conStruct, ctsem, DCPO, decontX, densEstBayes, disbayes, EcoEnsemble, eDNAjoint, eggCounts, EloSteepness, EpiNow2, EpiPvr, expertsurv, fcirt, FlexReg, gastempt, geostan, glmmfields, glmmPen, glmmrBase, greencrab.toolkit, GUD, hbamr, hBayesDM, historicalborrowlong, hmde, hsstan, hwep, IgGeneUsage, imt, intervalpsych, isotracer, jfa, lgpr, LMMELSM, MADPop, measr, metaBMA, MetaboDynamics, MetaStan, miniLNM, MIRES, mlts, morseTKTD, mrbayes, multinma, multipleDL, networkscaleup, OncoBayes2, oncomsm, parTimeROC, pcFactorStan, pema, phacking, phylopairs, PoolTestR, ppcseq, ProbBreed, prome, prophet, psBayesborrow, publipha, R2D2ordinal, rater, RBesT, rbioacc, rcbayes, Rlgt, rmBayes, rmsb, RoBTT, rPBK, rstanarm, rstanbdp, rstanemax, rts2, saeHB.TF.beta, scMET, serofoi, serosv, SLGP, spsurv, ssMousetrack, StanMoMo, surveil, survextrap, survstan, thurstonianIRT, tipsae, tmbstan, trialr, TriDimRegression, truncnormbayes, tsnet, ubms, walker, WhiteLabRt, winputall, YPBP, YPPE, zoid

Reverse suggests: alien, BayesERtools, bayesian, BayesianLasso, bayesImageS, bayesnec, bayesplot, BayesPostEst, bayestestR, BayesTools, birdie, bridgesampling, brms.mmrm, broom.mixed, compareMCMCs, convergenceDFM, EconCausal, finalfit, flocker, hmmTMB, loo, lorad, makemyprior, metabias, mice, modeltime, mpower, parameters, pcvr, PosteriorBootstrap, postpack, priorsense, rjuliabugs, rstantools, salmonMSE, socialSim, SoupX, StanHeaders, survHE, swfscMisc, tidybayes, unifed

Reverse enhances: DHARMa, dsem, mrregression

Linking:

Please use the canonical form https://CRAN.R-project.org/package=rstan to link to this page.