Gene Set Analysis Using the Gene Set Ordinal Association Test [R package goat version 1.1.3]

Frank Koopmans

goat: Gene Set Analysis Using the Gene Set Ordinal Association Test

Perform gene set enrichment analyses using the Gene set Ordinal Association Test (GOAT) algorithm and visualize your results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.

Version: 1.1.3

Depends: R (≥ 4.1.0), dplyr (≥ 1.0.3)

Imports: tibble (≥ 3.0.0), tidyselect (≥ 1.2.0), tidyr (≥ 1.1.2), data.table (≥ 1.14.0), Matrix (≥ 1.4-0), readxl (≥ 1.4.1), writexl (≥ 1.4.1), Rcpp (≥ 1.0.9), vctrs (≥ 0.3.8), MonoPoly (≥ 0.3-10), ggplot2 (≥ 3.3.0), pheatmap (≥ 1.0.8), treemap (≥ 2.4), igraph (≥ 1.2.5), ggraph (≥ 2.0.0)

LinkingTo: Rcpp

Suggests: AnnotationDbi, GO.db, org.Hs.eg.db, org.Pt.eg.db, org.Mmu.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Dr.eg.db, org.Dm.eg.db, org.Ce.eg.db, fgsea, testthat (≥ 3.0.0)

Published: 2025年08月27日

DOI: 10.32614/CRAN.package.goat

Author: Frank Koopmans ORCID iD [aut, cre]

Maintainer: Frank Koopmans <ftwkoopmans at gmail.com>

License: Apache License (≥ 2)

URL: https://github.com/ftwkoopmans/goat/

NeedsCompilation: yes

Language: en-US

Citation: goat citation info

Materials: README, NEWS

CRAN checks: goat results

Documentation:

Reference manual: goat.html , goat.pdf

Downloads:

Package source: goat_1.1.3.tar.gz

Windows binaries: r-devel: goat_1.1.3.zip, r-release: goat_1.1.3.zip, r-oldrel: goat_1.1.3.zip

macOS binaries: r-release (arm64): goat_1.1.3.tgz, r-oldrel (arm64): goat_1.1.3.tgz, r-release (x86_64): goat_1.1.3.tgz, r-oldrel (x86_64): goat_1.1.3.tgz

Old sources: goat archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=goat to link to this page.