CRAN: Package ggpicrust2

ggpicrust2: Make 'PICRUSt2' Output Analysis and Visualization Easier

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Version: 2.5.2

Depends: R (≥ 3.5.0)

Imports: aplot, dplyr, ggplot2, grid, ggh4x, readr, tibble, tidyr, ggprism, patchwork, ggplotify, magrittr, progress, stats, methods, grDevices, tidygraph, ggraph, utils

Suggests: Biobase, KEGGREST, ComplexHeatmap, BiocGenerics, testthat (≥ 3.0.0), ALDEx2, DESeq2, edgeR, GGally, ggdendro, limma, Maaslin2, metagenomeSeq, MicrobiomeStat, SummarizedExperiment, circlize, lefser, fgsea, clusterProfiler, enrichplot, DOSE, ggVennDiagram, UpSetR, igraph

Published: 2025年08月25日

DOI: 10.32614/CRAN.package.ggpicrust2

Author: Chen Yang [aut, cre], Liangliang Zhang [aut]

Maintainer: Chen Yang <cafferychen7850 at gmail.com>

BugReports: https://github.com/cafferychen777/ggpicrust2/issues

License: MIT + file LICENSE

URL: https://github.com/cafferychen777/ggpicrust2, https://cafferyang.com/ggpicrust2/

NeedsCompilation: no

CRAN checks: ggpicrust2 results

Documentation:

Reference manual: ggpicrust2.html , ggpicrust2.pdf

Downloads:

Package source: ggpicrust2_2.5.2.tar.gz

Windows binaries: r-devel: ggpicrust2_2.5.2.zip, r-release: ggpicrust2_2.5.2.zip, r-oldrel: ggpicrust2_2.5.2.zip

macOS binaries: r-release (arm64): ggpicrust2_2.5.2.tgz, r-oldrel (arm64): ggpicrust2_2.5.2.tgz, r-release (x86_64): ggpicrust2_2.5.2.tgz, r-oldrel (x86_64): ggpicrust2_2.5.2.tgz

Old sources: ggpicrust2 archive

Linking:

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