Genetics Input/Output Functions [R package genio version 1.1.2]

Alejandro Ochoa

genio: Genetics Input/Output Functions

Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.

Version: 1.1.2

Imports: readr (≥ 2.0.0), tibble, dplyr, Rcpp

LinkingTo: Rcpp

Suggests: testthat, knitr, rmarkdown, BEDMatrix, snpStats, lobstr

Published: 2023年01月06日

DOI: 10.32614/CRAN.package.genio

Author: Alejandro Ochoa ORCID iD [aut, cre]

Maintainer: Alejandro Ochoa <alejandro.ochoa at duke.edu>

BugReports: https://github.com/OchoaLab/genio/issues

License: GPL-3

URL: https://github.com/OchoaLab/genio

NeedsCompilation: yes

Materials: README, NEWS

CRAN checks: genio results

Documentation:

Reference manual: genio.html , genio.pdf

Vignettes: Read and write BED files with 'genio' (source, R code)

Downloads:

Package source: genio_1.1.2.tar.gz

Windows binaries: r-devel: genio_1.1.2.zip, r-release: genio_1.1.2.zip, r-oldrel: genio_1.1.2.zip

macOS binaries: r-release (arm64): genio_1.1.2.tgz, r-oldrel (arm64): genio_1.1.2.tgz, r-release (x86_64): genio_1.1.2.tgz, r-oldrel (x86_64): genio_1.1.2.tgz

Old sources: genio archive

Reverse dependencies:

Reverse imports: jackstraw, lit, modACDC, smer

Reverse suggests: gcatest, lfa, MoBPS

Linking:

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