dyngen: A Multi-Modal Simulator for Spearheading Single-Cell Omics
Analyses
A novel, multi-modal simulation engine for
studying dynamic cellular processes at single-cell resolution. 'dyngen'
is more flexible than current single-cell simulation engines. It
allows better method development and benchmarking, thereby stimulating
development and testing of novel computational methods. Cannoodt et
al. (2021) <doi:10.1038/s41467-021-24152-2>.
Version:
1.0.5
Depends:
R (≥ 3.5.0)
Imports:
assertthat,
dplyr,
dynutils (≥ 1.0.10),
ggplot2,
ggraph (≥
2.0),
ggrepel,
GillespieSSA2 (≥ 0.2.6), grDevices, grid,
igraph,
lmds,
Matrix, methods,
patchwork,
pbapply,
purrr,
rlang (≥ 0.4.1), stats,
tibble,
tidygraph,
tidyr, utils,
viridis
Published:
2022年10月12日
Author:
Robrecht Cannoodt
ORCID iD
[aut, cre, cph],
Wouter Saelens
ORCID iD
[aut]
Maintainer:
Robrecht Cannoodt <rcannood at gmail.com>
NeedsCompilation:
no
Documentation:
Downloads:
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