CRAN: Package copyseparator

copyseparator: Assembling Long Gene Copies from Short Read Data

Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.

Version: 1.2.0

Depends: R (≥ 3.5.0)

Imports: ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings, grDevices, doParallel, foreach, parallel

Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)

Published: 2022年11月25日

DOI: 10.32614/CRAN.package.copyseparator

Author: Lei Yang

Maintainer: Lei Yang <leiyangslu at gmail.com>

BugReports: https://github.com/LeiYang-Fish/copyseparator/issues

License: GPL-2

URL: https://github.com/LeiYang-Fish/copyseparator

NeedsCompilation: no

Materials: NEWS

CRAN checks: copyseparator results

Documentation:

Reference manual: copyseparator.html , copyseparator.pdf

Vignettes: Usage_of_copyseparator (source, R code)

Downloads:

Package source: copyseparator_1.2.0.tar.gz

Windows binaries: r-devel: copyseparator_1.2.0.zip, r-release: copyseparator_1.2.0.zip, r-oldrel: copyseparator_1.2.0.zip

macOS binaries: r-release (arm64): copyseparator_1.2.0.tgz, r-oldrel (arm64): copyseparator_1.2.0.tgz, r-release (x86_64): copyseparator_1.2.0.tgz, r-oldrel (x86_64): copyseparator_1.2.0.tgz

Old sources: copyseparator archive

Linking:

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